These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1332 fasta sequence [CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA] [+] EMBL AK072025 [CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA] [+] EMBL AK107219 [ ACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA] [+] EMBL BI305846 [ gnGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCA ] consensusID : consensus_7240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 901 fasta sequence [AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACCTGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCCGNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGCAAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT] [+] EMBL CA763859 [AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACCTGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCCGNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGCAAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7240#0 CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTC 60 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCG 120 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 CGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACC 180 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCA 240 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 CTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTA 300 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 AAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCA 360 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 TTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTT 420 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 TATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCA 480 consensus_7240#1 ----------------------AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCA 38 ************************************** consensus_7240#0 AATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCT 540 consensus_7240#1 AATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCT 98 ************************************************************ consensus_7240#0 GTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTAT 600 consensus_7240#1 GTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAG--------------- 143 ********************************************* consensus_7240#0 TACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTG 660 consensus_7240#1 ----------------------TGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTG 181 ************************************** consensus_7240#0 TACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACT 720 consensus_7240#1 TACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACT 241 ************************************************************ consensus_7240#0 GTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTT 780 consensus_7240#1 GTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTT 301 ************************************************************ consensus_7240#0 GTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTT 840 consensus_7240#1 GTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTT 361 ************************************************************ consensus_7240#0 GATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAA 900 consensus_7240#1 GATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAA 421 ************************************************************ consensus_7240#0 TCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTAC 960 consensus_7240#1 TCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTAC 481 ************************************************************ consensus_7240#0 AGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACC 1020 consensus_7240#1 AGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACC 541 ************************************************************ consensus_7240#0 TATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTT 1080 consensus_7240#1 TATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTT 601 ************************************************************ consensus_7240#0 TACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACT 1140 consensus_7240#1 TACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACT 661 ****************************************** ***************** consensus_7240#0 GTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGG-ATAAAGCTTTACC 1199 consensus_7240#1 GTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACC 721 *************************** ****** *** ******* ******* ***** consensus_7240#0 TGATATGTGTCTTGTG-TTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCAT-CC 1257 consensus_7240#1 TGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCC 781 ******* * * ** * ** ************************************ ** consensus_7240#0 GTGTACACCTCTGAGCATTATGCTCAAA-TTTTGTGTCGTAAGATGTAACGCCCC-TTGC 1315 consensus_7240#1 GNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGC 841 * ************ ********** ** ***** * ** *********** *** **** consensus_7240#0 AAGGATGGGAAAAGAAA------------------------------------------- 1332 consensus_7240#1 AAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT 901 ********* *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||