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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1924 fasta sequence
[CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAATGGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGGCAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGACTGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGAGCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAAGGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCGCCTG]
[+] EMBL AK102629 [CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAATGGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGGCAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGACTGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGAGCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAAGGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCGCCTG]
[+] EMBL AK058943 [ CAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGT ]
[-] EMBL CB650344 [ CATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATC TTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGT ]
consensusID : consensus_7244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[GGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA]
[-] EMBL CA760258 [GGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7244#0 CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAAT 60
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 GGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGG 120
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 CAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGAC 180
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCAC 240
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGA 300
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 GCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTAT 360
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 CTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAA 420
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 GGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGC 480
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATC 540
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGG 600
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 ACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGAT 660
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 AATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCT 720
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 GGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGT 780
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 AATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGC 840
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 CCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGT 900
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGA 960
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTG 1020
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 TGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCA 1080
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 AAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCT 1140
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 CCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGA 1200
consensus_7244#1 ------------------------------------------------------------
consensus_7244#0 AATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAAT 1260
consensus_7244#1 -----------------------------------------------------GGGAAAT 7
*******
consensus_7244#0 ACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGAT 1320
consensus_7244#1 ACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGAT 67
************************************************************
consensus_7244#0 AAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAG 1380
consensus_7244#1 AAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAG 127
**** *******************************************************
consensus_7244#0 TGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTC 1440
consensus_7244#1 TGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTC 187
************************************************************
consensus_7244#0 TGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGA 1500
consensus_7244#1 TGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGA 247
************************************************************
consensus_7244#0 GGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCAC 1560
consensus_7244#1 GGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCAC 307
************************************************************
consensus_7244#0 GTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCG 1620
consensus_7244#1 GTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCG 367
****************************************** *****************
consensus_7244#0 TCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCC 1680
consensus_7244#1 TCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCC 427
*********************************************** ************
consensus_7244#0 ACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTT 1740
consensus_7244#1 ACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTT 487
****************************************** *****************
consensus_7244#0 TTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGT 1800
consensus_7244#1 TTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGT 547
************************************************************
consensus_7244#0 TCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGC 1860
consensus_7244#1 TCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGC 607
************************************************************
consensus_7244#0 AGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCG 1920
consensus_7244#1 AGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA---------------------- 645
**************** ** ****** * *
consensus_7244#0 CCTG 1924
consensus_7244#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||