These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1924 fasta sequence [CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAATGGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGGCAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGACTGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGAGCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAAGGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCGCCTG] [+] EMBL AK102629 [CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAATGGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGGCAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGACTGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGAGCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAAGGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCGCCTG] [+] EMBL AK058943 [ CAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTGTGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCAAAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCTCCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGT ] [-] EMBL CB650344 [ CATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGAAATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATC TTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGACTGT ] consensusID : consensus_7244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [GGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA] [-] EMBL CA760258 [GGGAAATACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGATAAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCCACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTTTTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGTTCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGCAGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7244#0 CGTACTGGGCTACGAGTCATTCATGCATACTATTGCTGACGAACACCCACTGCTCATAAT 60 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 GGTGTATTCAAAGGGTAGTCCTCGGTGTGCTCAATTTATTGAAAAATGGAAGCAAATCGG 120 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 CAGCCGACTGGATGGTGTAGCAAACACTGCTATGGTAGAACTTGGTGATGTGCAACTGAC 180 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGGTCATTTTGCAGAACAAAGGTTCTCTAAACAGCCATTTTTCCGTAATGGTCTACCCAC 240 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTACCCAGGTGA 300 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 GCTTTTTGTGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTAT 360 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 CTTGTACTATTCCAAGGAGACATTGGGGCCTGAGTTCATTGGGAAGAGCGGCCATCATAA 420 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 GGTCAAGGTTATCTTTTTCTCAAGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGC 480 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGCCCAAGAGTATTAGACCTATGCATCATTTGCATTTGTCTTATGGAAAGAAGATGAATC 540 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TCAGATTTGGTGGAATTCGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGG 600 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 ACCAGGTGCCAAGCCCATTGTATACCATGGAACTTTTACCAAGTCAGAGTTTACAAAGAT 660 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 AATGGAGGAGCATAAGCACCAAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCT 720 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 GGGTTGTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGT 780 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 AATTGTTGCTGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGATTTTGCGGAAGGC 840 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 CCAAGACCAACTATTTAGTGATGTCGATGCAAGTACTTCCGAGAATGTGGATAGTTCAGT 900 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGGTTGACCTTTGTTTGGTTGGA 960 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGGAGAAGTGCAGAAGAAACTTTGTGCCTTCTACCTTGCAACTGATTACAGTGGAGCCTG 1020 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGGTCCTGGAGGTTTTGGAGATGATAATGATAAATCTGAACTGTTTATTGTTCGTTTCCA 1080 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 AAGAAATGCAACATTTGAGGCGTTGAAAGCTGAGAAAACAAATAATCTTATGGAGGCTCT 1140 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 CCAAAGACAGCATACCGCTGATGCCTCCCAGCTAGTGGCAAGGTATAAAGGCCCGGACGA 1200 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 AATAGAGGAGATAAACAAATGGATCTCTCAGATTATCAAAGATGGAGATACTAGGGAAAT 1260 consensus_7244#1 -----------------------------------------------------GGGAAAT 7 ******* consensus_7244#0 ACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGAT 1320 consensus_7244#1 ACCTTACTTTACTTCAAAGGTACCAGATCTTGTGCCTGAGGAAACAAGTAAGGAATGGAT 67 ************************************************************ consensus_7244#0 AAAAAGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAG 1380 consensus_7244#1 AAAAGGTACCAAAAGTATCCGCTCAGCAGGAAACAGTGTAAAACAGAGGATCCAGAGCAG 127 **** ******************************************************* consensus_7244#0 TGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTC 1440 consensus_7244#1 TGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTC 187 ************************************************************ consensus_7244#0 TGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGA 1500 consensus_7244#1 TGCATGCATTTCAATGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGA 247 ************************************************************ consensus_7244#0 GGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCAC 1560 consensus_7244#1 GGATGGAGCACCTCCTAAAGACAAAACTAAGAAGCGTCGTCCTCGTCCGAAGCTTAGCAC 307 ************************************************************ consensus_7244#0 GTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGATGCTCG 1620 consensus_7244#1 GTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCCGAACCCAAAGATGCTCG 367 ****************************************** ***************** consensus_7244#0 TCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTCTATAATCAATCC 1680 consensus_7244#1 TCAGTGGGAGATGACTGACTCTGATTCGGACTAGCGAGTTAAACTCTGTATAATCAATCC 427 *********************************************** ************ consensus_7244#0 ACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCACCAATATCTGCAATCTT 1740 consensus_7244#1 ACCAATAGGACTAGAGATAGGACTAGGTAAAATGCTAATGCCCCCAATATCTGCAATCTT 487 ****************************************** ***************** consensus_7244#0 TTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGT 1800 consensus_7244#1 TTTTTTTTAGAATTCCAATATATGCAATCTGGAAAAACTTCGAGCAGTTCATCTGTCTGT 547 ************************************************************ consensus_7244#0 TCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGC 1860 consensus_7244#1 TCATTCATGTATCTACCCAACTGCTTGGAAGCGGACAAGCATGATATAGACCTCTCACGC 607 ************************************************************ consensus_7244#0 AGTAATATACTGTATGACTGTATAAACGTACGTGTACTTGTCTGATTTTGTTAATGGTCG 1920 consensus_7244#1 AGTAATATACTGTATGCCTCTATAAAAAAAAAAAAAAA---------------------- 645 **************** ** ****** * * consensus_7244#0 CCTG 1924 consensus_7244#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||