These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1260 fasta sequence [CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT] [+] EMBL AK105979 [CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT] [+] EMBL AK058327 [ GGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGGCGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGGTCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT] consensusID : consensus_7247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GGANNCGGGTGTGGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGTTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNGCNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA] [+] EMBL AA751908 [GGANNCGGGTGTGGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGTTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNGCNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA] consensusID : consensus_7247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [CACGGGTGTGGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNGTTNNCANCNNNCTNTGTNGTGCTTTNNAAG] [+] EMBL AA751907 [CACGGGTGTGGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNGTTNNCANCNNNCTNTGTNGTGCTTTNNAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7247#0 CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCT 60 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGC 120 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 GCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGC 180 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCC 240 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 TGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCG 300 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGAC 360 consensus_7247#1 ------------------------------------------------GGANNCGGGTGT 12 consensus_7247#2 ---------------------------------------------------CACGGGTGT 9 * consensus_7247#0 GCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGC 420 consensus_7247#1 GGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGC 72 consensus_7247#2 GGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGC 69 * ** ** * * ** ***** ******************** consensus_7247#0 GGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGG 480 consensus_7247#1 GGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGG 132 consensus_7247#2 GGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNG 129 *** **************************** ** ******************** * * consensus_7247#0 CTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGG 540 consensus_7247#1 TTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGG 192 consensus_7247#2 TTNNCANCNNNCTNTGTN-GTGCTTTNNAAG----------------------------- 159 * * * * * * * ** * consensus_7247#0 GAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGG 600 consensus_7247#1 GAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGG 252 consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCAT 660 consensus_7247#1 CCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCAT 312 consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCAT 720 consensus_7247#1 CCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCAT 372 consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGG 780 consensus_7247#1 CAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNG 432 consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CGGCG--CGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTC 838 consensus_7247#1 CNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA--------------------------- 465 consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 GCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTG 898 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 CCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTC 958 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 GGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTC 1018 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 AAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATC 1078 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 TCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCC 1138 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 ATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTG 1198 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 TAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGT 1258 consensus_7247#1 ------------------------------------------------------------ consensus_7247#2 ------------------------------------------------------------ consensus_7247#0 TT 1260 consensus_7247#1 -- consensus_7247#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||