These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1100 fasta sequence [CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTCGGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGACCCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAACCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCTCTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCTGGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGAGCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTT-AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTGTTCTTGTCCAAAAAAAAAAA] [+] EMBL AK059852 [CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTCGGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGACCCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAACCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCTCTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCTGGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGAGCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTT AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATT ] [-] EMBL CA759215 [ GATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAAGTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGA CTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTTTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTG AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTGTTCTTGTCCAAAAAAAAAAA] [+] EMBL AU162348 [ TCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTTAAATGTTTCAGTTGCAGGTGGNATCTTCNTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCNTGATTT ] consensusID : consensus_7248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTCATTTGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAAAAAAAAAAAAA] [-] EMBL CA759216 [AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTCATTTGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7248#0 CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTC 60 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 GGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGAC 120 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 CCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAA 180 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 CCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCT 240 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 CTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCT 300 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 GGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGA 360 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 GCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGAT 420 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 GAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACAT 480 consensus_7248#1 ------------------------------------------------------------ consensus_7248#0 GCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCT 540 consensus_7248#1 ---------------------AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCT 39 * * *** **************************** consensus_7248#0 CGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAAC 600 consensus_7248#1 CGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAAC 99 ************************************************************ consensus_7248#0 ATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTG 660 consensus_7248#1 ATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTG 159 **************************** ******************************* consensus_7248#0 TGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGT 720 consensus_7248#1 TGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGT 219 *************************************************** ******** consensus_7248#0 TGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCT 780 consensus_7248#1 TGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCT 279 ******************************************* **************** consensus_7248#0 GGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGA 840 consensus_7248#1 GGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGA 339 ************************************************************ consensus_7248#0 ACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGG 900 consensus_7248#1 ACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGG 399 ************************************************************ consensus_7248#0 CCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATT 960 consensus_7248#1 CCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGT-CATT 458 ************ ****************************************** **** consensus_7248#0 TGAATCTCTTAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACA 1020 consensus_7248#1 TGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACA 518 ********* ************************************************** consensus_7248#0 GCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTG 1080 consensus_7248#1 GCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAA-- 576 ********************************************************* consensus_7248#0 TTCTTGTCCAAAAAAAAAAA 1100 consensus_7248#1 ---------AAAAAAAAAAA 587 *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||