These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1222 fasta sequence [CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGAAATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACC] [+] EMBL AK061037 [CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGAAATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACC] consensusID : consensus_7253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1211 fasta sequence [ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA] [+] EMBL AK069376 [ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA] [+] EMBL CB678748 [ CCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCGGGCCGCCGAAGCAGGAACAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACGGGGCCCCGCCCGTCTCGGGACTCGAGTACGACGACACCGCGCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCGCCGCCGACCCCGAACGCGAGCGCGCCGCCGAAGGAGACCACGCCGACGCCAAGCCGCCTTCCCCA ] [+] EMBL OSR14371A [ CGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTTTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGNCGACCCCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7253#0 -CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCC 59 consensus_7253#1 ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCC 60 *********************************************************** consensus_7253#0 CGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACG 119 consensus_7253#1 CGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACG 120 ************************************************************ consensus_7253#0 AGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTC 179 consensus_7253#1 AGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTC 180 ************************************************************ consensus_7253#0 ACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAG 239 consensus_7253#1 ACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAG 240 ************************************************************ consensus_7253#0 CGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTG 299 consensus_7253#1 CGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTG 300 ************************************************************ consensus_7253#0 GGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCG 359 consensus_7253#1 GGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCG 360 ********* ************************************************** consensus_7253#0 AAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCG 419 consensus_7253#1 AAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCG 420 ************************************************************ consensus_7253#0 CACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCC 479 consensus_7253#1 CACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCC 480 ************************************************************ consensus_7253#0 GTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGC 539 consensus_7253#1 GTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGC 540 ************************************************************ consensus_7253#0 GCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTC 599 consensus_7253#1 GCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTC 600 ************************************************************ consensus_7253#0 CCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGA 659 consensus_7253#1 CCCTGGAAG--------------------------------------------------- 609 ********* consensus_7253#0 AATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGC 719 consensus_7253#1 --------------------------------------ATGTTCGTCGAGTCCTGCAAGC 631 ********************** consensus_7253#0 GGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGAT 779 consensus_7253#1 GGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGAT 691 ************************************************************ consensus_7253#0 AATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCT 839 consensus_7253#1 AATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCT 751 ************************************************************ consensus_7253#0 GTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTC 899 consensus_7253#1 GTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTC 811 ************************************************************ consensus_7253#0 CATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGT 959 consensus_7253#1 CATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGT 871 ************************************************************ consensus_7253#0 ACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCT 1019 consensus_7253#1 ACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCT 931 ************************************************************ consensus_7253#0 GCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGG 1079 consensus_7253#1 GCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGG 991 ************************************************************ consensus_7253#0 GAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCT 1139 consensus_7253#1 GAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCT 1051 ************************************************************ consensus_7253#0 GTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAA 1199 consensus_7253#1 GTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAA 1111 ************************************************************ consensus_7253#0 ATGCAATGTATACATGATATACC------------------------------------- 1222 consensus_7253#1 ATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTT 1171 *********************** consensus_7253#0 ---------------------------------------- consensus_7253#1 CTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA 1211 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||