These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1173 fasta sequence [GGGGCCAACCGCCGCTAAGTCCAAAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTTGCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT] [+] EMBL AK102605 [GGGGCCAACCGCCGCTAAGTCCAAAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTTGCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT] [+] EMBL BE040217 [ AGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTT TTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATT ] consensusID : consensus_7255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1115 fasta sequence [AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT] [+] EMBL AK059834 [AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT] [+] EMBL AK106139 [ GAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGTGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7255#0 --------------GGGGCCAACCGCCGCTAA-----GTCCAAAGAGAGAGAGAAAAAAA 41 consensus_7255#1 AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAA 60 * * *** *** * * ***************** consensus_7255#0 AAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCT 101 consensus_7255#1 AAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCT 120 ************************************************************ consensus_7255#0 CCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTC 161 consensus_7255#1 CCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTC 180 ************************************************************ consensus_7255#0 GGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCAC 221 consensus_7255#1 GGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCAC 240 ************************************************************ consensus_7255#0 GGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTC 281 consensus_7255#1 GGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTC 300 ************************************************************ consensus_7255#0 CCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTC 341 consensus_7255#1 CCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTC 360 ************************************************************ consensus_7255#0 CAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGG 401 consensus_7255#1 CAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGG 420 ************************************************************ consensus_7255#0 CTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGC 461 consensus_7255#1 CTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGC 480 ************************************************************ consensus_7255#0 GCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGT 521 consensus_7255#1 GCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGT 540 ************************************************************ consensus_7255#0 CGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGC 581 consensus_7255#1 CGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGC 600 ************************************************************ consensus_7255#0 CCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGA 641 consensus_7255#1 CCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGA 660 ************************************************************ consensus_7255#0 CTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAA 701 consensus_7255#1 CTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAA 720 ************************************************************ consensus_7255#0 GCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCAT 761 consensus_7255#1 GCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCAT 780 ************************************************************ consensus_7255#0 GCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGAT 821 consensus_7255#1 GCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGAT 840 ************************************************************ consensus_7255#0 TTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCA 881 consensus_7255#1 TTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCA 900 ************************************************************ consensus_7255#0 TGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGT 941 consensus_7255#1 TGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGT 960 ************************************************************ consensus_7255#0 ATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATA 1001 consensus_7255#1 ATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATA 1020 ************************************************************ consensus_7255#0 GAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACC 1061 consensus_7255#1 GAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACC 1080 ************************************************************ consensus_7255#0 GTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTT 1121 consensus_7255#1 GTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT------------------------- 1115 *********************************** consensus_7255#0 GCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT 1173 consensus_7255#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||