|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1361 fasta sequence
[GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTAGAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATGATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCTATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGTTTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGACGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTGATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTTATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGGTTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTGAAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGGTGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTAGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA-GAATGGTGATTCTAG-TATTCCACATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTTTTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA]
[+] EMBL CB647971 [GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTAGAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATGATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCTATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGTTTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGACGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTGATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTTATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGGTTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTGAAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGGTGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTAGCTGAAATTCAGGAACAAGTTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA GAATGGTGATTCTAG TATTCCACATGATATGATATACTCAGCATCAGTTCC ]
[+] EMBL CA765142 [ CCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTGGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA GAATGGTGATTCTAG TATTCCACATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTTTTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTG ]
[-] EMBL CA760067 [ ACAAACTGTTGGTTATTAAAACGATTGTGAAAAGGATAGTGACTGGGAAGAGAATCAGGAATGGTGATTTTAGTTATTCCCCATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGGTGAGCATCTAAATGCAATGGCCAAAGTTTTTGATGAGGATGGCGCCGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGGAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA]
consensusID : consensus_7259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[AGTGGAGCATTTAAATGCAATGGGGAAAGTTTTTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATGAGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGCTGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATTAGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAATGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTCAATTGGAGGTC]
[-] EMBL CB647972 [AGTGGAGCATTTAAATGCAATGGGGAAAGTTTTTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATGAGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGCTGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATTAGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAATGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTCAATTGGAGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7259#0 GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTA 60
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 GAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATG 120
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCT 180
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGT 240
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGA 300
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 CGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTG 360
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTT 420
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGG 480
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTG 540
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 AAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGG 600
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAG 660
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATACCTTAGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATA 720
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 GTGACTGGGAAGAGATTCAGAATGGTGATTCTAGTATTCCACATGATATGATATACTCAG 780
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 CATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTT 840
consensus_7259#1 ----------------------------AGTGGAGCATTTAAATGCAATGGGGAAAGTTT 32
*** ****** ************ *******
consensus_7259#0 TTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATG 900
consensus_7259#1 TTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATG 92
************ ******************************** ***** * ******
consensus_7259#0 AGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGC 960
consensus_7259#1 AGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGC 152
*** ******** ******* ********** ********* ******************
consensus_7259#0 CGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAG 1020
consensus_7259#1 TGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAG 212
************* ****************************** **************
consensus_7259#0 TTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATT 1080
consensus_7259#1 TTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATT 272
***************************** ***** ****** *********** ****
consensus_7259#0 AGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAA 1140
consensus_7259#1 AGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAA 332
********** *************************** *********** *********
consensus_7259#0 TGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTA 1200
consensus_7259#1 TGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTA 392
******* ****** *************** ****************************
consensus_7259#0 TTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTT 1260
consensus_7259#1 TTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTT 452
*************** ********************************************
consensus_7259#0 GCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGT 1320
consensus_7259#1 GCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGT 512
************************************************************
consensus_7259#0 TCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA------------------- 1361
consensus_7259#1 TCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTC 572
***************************** *
consensus_7259#0 -----------
consensus_7259#1 AATTGGAGGTC 583
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||