These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1146 fasta sequence [TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACCTTTAAAAAAAGGGA] [+] EMBL AK068597 [TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACC ] [-] EMBL CB654507 [ CCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGTGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCCCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACCTTTAAAAAAAGGGA] [+] EMBL AK060240 [ GCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGA ] consensusID : consensus_7266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGATTCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGG] [+] EMBL CB654506 [AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGATTCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7266#0 TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCT 60 consensus_7266#1 -----------------AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCT 43 ****** * ********************************** consensus_7266#0 CGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAG 120 consensus_7266#1 CGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAG 103 ************************************* ********************** consensus_7266#0 CGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTC 180 consensus_7266#1 CGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTC 163 ************************************************************ consensus_7266#0 CTTCCTCCCCTGCTTCCTCCCCTGCT---------------------------------- 206 consensus_7266#1 CTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGAT 223 ************************** consensus_7266#0 ----------------------------------------------------CGCCCGGA 214 consensus_7266#1 TCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGA 283 ******** consensus_7266#0 TCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAAC 274 consensus_7266#1 TCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAAC 343 ************************************************************ consensus_7266#0 ATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTC 334 consensus_7266#1 ATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTC 403 ************************************************************ consensus_7266#0 GCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGAC 394 consensus_7266#1 GCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGAC 463 ************************************************************ consensus_7266#0 CCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATC 454 consensus_7266#1 CCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATC 523 ************************************************************ consensus_7266#0 CTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTC 514 consensus_7266#1 CTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTC 583 ************************************************************ consensus_7266#0 TCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAG 574 consensus_7266#1 TCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAG 643 ************************************************************ consensus_7266#0 TACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAG 634 consensus_7266#1 TACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAG 703 ************************************************************ consensus_7266#0 ACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGG 694 consensus_7266#1 ACGGCGGGGGAGGAGATGTGCAAGATGG-------------------------------- 731 **************************** consensus_7266#0 TGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTC 754 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCG 814 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGA 874 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTT 934 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGC 994 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 TTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATAC 1054 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 TGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAA 1114 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GTTTGGATGGATTACACCTTTAAAAAAAGGGA 1146 consensus_7266#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||