cluster # 7271

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Oryza sativa
cluster # 7271 cluster # 7271 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7271#0 length = 1000 sequences # 2

consensus_7271#1 length = 914 sequences # 2

consensusID : consensus_7271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1000
fasta sequence

                              [TTCGTTGCTCTCCTCCCCGGCCGGTAGGCAGCAACAAGCTGTAAGCACAAGTATCGAAATGGTTAGCGGTGATGTAGGAGTAGTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCGG-TGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGCCATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGGCGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGATGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGCCATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGCCTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGACGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGAGGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGACGTGGCGCAGGTGGACCTCAAGGAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCGGGAGTCGTGGGGGTCGGTGTGGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAACTGGACGCCCAACACCTTCTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTCTTCCCTAACTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAATTCCGATATCATCATATATA]

[+] EMBL AK070972             [TTCGTTGCTCTCCTCCCCGGCCGGTAGGCAGCAACAAGCTGTAAGCACAAGTATCGAAATGGTTAGCGGTGATGTAGGAGTAGTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCGG TGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGCCATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGGCGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGATGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGCCATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGCCTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGACGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGAGGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGACGTGGCGCAGGTGGACCTCAAGGAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCGGGAGTCGTGGGGGTCGGTGTGGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAACTGGACGCCCAACACCTTCTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTCTTCCCTAACTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAATTCCGATATCATCATATATA]
[+] EMBL OSS3505A             [                                                                            GGAGTAGTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCGGNTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCNAGGCCATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAAC GNGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGGTGCAATCGAAACCCCGCCTGCTNCGGCAACGCCCAGACCGTCGNCATCAACGACATGAACTACTTCCCCCTCTTCCAGTACCACTTCGACCTCAGCGGCATCG CTTCGGCCGGCTTGGCAAG CCGGCCGNG CGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_7271#0
TTCGTTGCTCTCCTCCCCGGCCGGTAGGCAGCAACAAGCTGTAAGCACAAGTATCGAAAT
GGTTAGCGGTGATGTAGGAGTAGTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCA
GGGGTGCAAAGGCAGCAGCGCGGTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGC
CATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGG
CGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTT
CATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTC
CTGCTACCGCGTCAGATGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGC
CATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGC
CTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGA
CGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGA
GGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGA
CGTGGCGCAGGTGGACCTCAAGGAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCG
GGAGTCGTGGGGGTCGGTGTGGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTC
CATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAA
CTGGACGCCCAACACCTTCTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCC
TATACCCATTAATTCTTCCCTAACTATTCCTTCTTGTTATTATATTCTACCCTTATATAT
ATATATATATATGTTATTAATTCCGATATCATCATATATA

consensusID : consensus_7271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 914
fasta sequence

                              [GTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCGGTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGCCATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGGCGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGGTGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGCCATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGCCTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGACGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGAGGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGACGTGGCGCAGGTGGACCTCAAGGA-GGCCG-GCGCCGGAGGAGGA-AG-GTGGACGCCGATGCGGGAGTCGTGGGGGT-CGGTGT-GGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCAT-CCCCCTCAACTGGACGCCCAACACCTTTTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTTTTCCCTAATTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAAAAAAAAAAAAAAAAAA]

[+] EMBL AF261276             [GTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCGGTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGCCATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGGCGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGGTGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGCCATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGCCTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGACGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGAGGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGACGTGGCGCAGGTGGACCTCAAGGA GGCCG GCGCCGGAGGAGGA AG GTGGACGCCGATGCGGGAGTCGTGGGGGT CGGTGT GGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCAT CCCCCTCAACTGGACGCCCAACACCTTTTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTTTTCCCTAATTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU108370             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCTCAAGGATGGCCGNGCGCCGGAGGAGGANAGTGTGGACGCCGATGCGGGAGTCGTGGGGGTACGGTGTNGGAGGCTGGACTCCAACCACCG CTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTNATNCCCCCTCAACTGGACGCCCAACACCTTCTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTCTTCCCTAATTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAAAAAAAAAAAAAAAAAA]




>consensus_7271#1
GTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCAGGGGTGCAAAGGCAGCAGCGCG
GTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGCCATCGGTGGTGCGGCGGCGTGG
GGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGGCGCCGGGGCGGCGGACAACGGC
GGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTTCATGGGGATGACGTCGTGCGGG
AACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTCCTGCTACCGCGTCAGGTGCAAT
CGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGCCATCACCGACATGAACTACTTC
CCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGCCTTCGGCCGCCTCGCCAAGCCC
GGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGACGTGCAGTTCGCGCGCGTGCCG
TGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGAGGAAGGGTCCAGCCCCGTGTAC
CTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGACGTGGCGCAGGTGGACCTCAAG
GAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCGGGAGTCGTGGGGGTCGGTGTGG
AGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTCCATCCGCATCCGGAGCGACTCC
GGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAACTGGACGCCCAACACCTTTTAC
CGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCCTATACCCATTAATTTTTCCCTA
ATTATTCCTTCTTGTTATTATATTCTACCCTTATATATATATATATATATGTTATTAAAA
AAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7271#0      TTCGTTGCTCTCCTCCCCGGCCGGTAGGCAGCAACAAGCTGTAAGCACAAGTATCGAAAT 60
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      GGTTAGCGGTGATGTAGGAGTAGTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCA 120
consensus_7271#1      ----------------------GTAGTGTACTACCTGCTGCTAGTATTAGTGGTGGTGCA 38
                                            **************************************

consensus_7271#0      GGGGTGCAAAGGCAGCAGCGCGGTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGC 180
consensus_7271#1      GGGGTGCAAAGGCAGCAGCGCGGTGCAGGGTGAAGGTCGGTGGTACAACGAGAGCGAGGC 98
                      ************************************************************

consensus_7271#0      CATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGG 240
consensus_7271#1      CATCGGTGGTGCGGCGGCGTGGGGGAACGCGAAGGCGACGTGGTACGGGCAGCCGAACGG 158
                      ************************************************************

consensus_7271#0      CGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTT 300
consensus_7271#1      CGCCGGGGCGGCGGACAACGGCGGGGCGTGCGGGTTCAAGAAGGTGAACCAGTACCCGTT 218
                      ************************************************************

consensus_7271#0      CATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTC 360
consensus_7271#1      CATGGGGATGACGTCGTGCGGGAACCAGCCGCTGTACAAGGGCGGCAAGGGCTGCGGCTC 278
                      ************************************************************

consensus_7271#0      CTGCTACCGCGTCAGATGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGC 420
consensus_7271#1      CTGCTACCGCGTCAGGTGCAATCGAAACCCCGCCTGCTCCGGCAACGCCCAGACCGTCGC 338
                      *************** ********************************************

consensus_7271#0      CATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGC 480
consensus_7271#1      CATCACCGACATGAACTACTTCCCCCTCTCCCAGTACCACTTCGACCTCAGCGGCATCGC 398
                      ************************************************************

consensus_7271#0      CTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGA 540
consensus_7271#1      CTTCGGCCGCCTCGCCAAGCCCGGCCGCGCCGACGACCTCCGCCGCGCGGGGATCATCGA 458
                      ************************************************************

consensus_7271#0      CGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGA 600
consensus_7271#1      CGTGCAGTTCGCGCGCGTGCCGTGCGAGTTCCCGGGCCTCAAGGTGGGATTCCACGTGGA 518
                      ************************************************************

consensus_7271#0      GGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGA 660
consensus_7271#1      GGAAGGGTCCAGCCCCGTGTACCTGGCGGTGCTGGTGGAGTACGAGAACGGCGACGGAGA 578
                      ************************************************************

consensus_7271#0      CGTGGCGCAGGTGGACCTCAAGGAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCG 720
consensus_7271#1      CGTGGCGCAGGTGGACCTCAAGGAGGCCGGCGCCGGAGGAGGAAGGTGGACGCCGATGCG 638
                      ************************************************************

consensus_7271#0      GGAGTCGTGGGGGTCGGTGTGGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTC 780
consensus_7271#1      GGAGTCGTGGGGGTCGGTGTGGAGGCTGGACTCCAACCACCGCCTGCGGGCGCCATTCTC 698
                      ************************************************************

consensus_7271#0      CATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAA 840
consensus_7271#1      CATCCGCATCCGGAGCGACTCCGGCAAGACGTTGGTGGCACCCGACGTCATCCCCCTCAA 758
                      ************************************************************

consensus_7271#0      CTGGACGCCCAACACCTTCTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCC 900
consensus_7271#1      CTGGACGCCCAACACCTTTTACCGTTCCTTCGTCCAGTACTCCTCCTAGCTAGCTACTCC 818
                      ****************** *****************************************

consensus_7271#0      TATACCCATTAATTCTTCCCTAACTATTCCTTCTTGTTATTATATTCTACCCTTATATAT 960
consensus_7271#1      TATACCCATTAATTTTTCCCTAATTATTCCTTCTTGTTATTATATTCTACCCTTATATAT 878
                      ************** ******** ************************************

consensus_7271#0      ATATATATATATGTTATTAATTCCGATATCATCATATATA 1000
consensus_7271#1      ATATATATATATGTTATTAAAAAAAAAAAAAAAAAA---- 914
                      ********************     * *  *  * *