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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1766 fasta sequence
[CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGAAGTAGCTGGATGATAGAAGTGGTCATATCAACTGTGTATTTGTAAGCATGTTTTTTGTTTGAAATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAGCCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGCTTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG]
[+] EMBL AK059922 [CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGAAGTAGCTGGATGATAGAAGTGGTCATATCAACTGTGTATTTGTAAGCATGTTTTTTGTTTGAAATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATA ]
[-] EMBL AK121772 [ CTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAGCCCAT ]
[-] EMBL AK059121 [ TTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCACCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGGGGCGCCCATGGGGGTGGATCCTGCGCAGCCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGCTTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG]
consensusID : consensus_7272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 916 fasta sequence
[TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGCGAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCTGAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTCTACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAA]
[+] EMBL AK060053 [TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGCGAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCTGAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTCTACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7272#0 ------------------------------------------------------------
consensus_7272#1 TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGC 60
consensus_7272#0 --------CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGA----AGTAGCTG 48
consensus_7272#1 GAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCT 120
* * * * * * * * ** * * ** *
consensus_7272#0 GATGATAGAAGTGG-TCATATCA--ACTGTGTATTTGTAAGCATG---TTTTTTGTTTGA 102
consensus_7272#1 GAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTC 180
** ** *** * ** ** **** ** * * * * ** *
consensus_7272#0 AATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTT 162
consensus_7272#1 TACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTT 240
* * *************************************************
consensus_7272#0 GTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAG 222
consensus_7272#1 GTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAG 300
************************************************************
consensus_7272#0 GACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCA 282
consensus_7272#1 GACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCA 360
************************************************************
consensus_7272#0 TATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCA 342
consensus_7272#1 TATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCA 420
************************************************************
consensus_7272#0 AAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATA 402
consensus_7272#1 AAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATA 480
************************************************************
consensus_7272#0 TGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTT 462
consensus_7272#1 TGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTT 540
************************************************************
consensus_7272#0 CACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTC 522
consensus_7272#1 CACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTC 600
************************************************************
consensus_7272#0 GCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAG 582
consensus_7272#1 GCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAG 660
************************************************************
consensus_7272#0 GTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACA 642
consensus_7272#1 GTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACA 720
************************************************************
consensus_7272#0 TTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACT 702
consensus_7272#1 TTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACT 780
************************************************************
consensus_7272#0 GATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTC 762
consensus_7272#1 GATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTC 840
************************************************************
consensus_7272#0 CACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACC 822
consensus_7272#1 CACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACC 900
************************************************************
consensus_7272#0 AGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGA 882
consensus_7272#1 AGGTAATGCATTGCAA-------------------------------------------- 916
****************
consensus_7272#0 GGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACT 942
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTT 1002
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGAT 1062
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 ATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCT 1122
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATC 1182
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATC 1242
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTG 1302
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACA 1362
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 ATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACA 1422
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCC 1482
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGC 1542
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAG 1602
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGC 1662
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCC 1722
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG 1766
consensus_7272#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||