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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7274 cluster # 7274       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7274#0 length = 978 sequences # 4  

consensusID : consensus_7274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 978
fasta sequence
                              [AATCGGCGGAAAATGCAATTACTTGGTGTCGCTTGCCTGCTTATAGCTTCTAAGTATGAAGAGATATGCCCACCCCAAGTAGAAGAGCTCTGCTATATTTCTGACAATACATACACTAAGGATGAGGTTTTGAAAATGGAAGCTTCTGTCCTGAAATACTTGAAGTTTGAGATGACTGCACCTACAACAAAATGCTTTTTGAGGAGATTTCTACGAGCTGCTCAAGTATGCCATGAGGCTCCAGTTTTGCATCTTGAGTTCCTAGCTAATTACATTGCGGAGCTATCACTTCTGGAGTACAGCTTAATTTGCTATGTACCGTCACTTATAGCTGCGTCTTCTATTTTCTTGGCGAAGTTTATCCTTAAGCCAACAGAGAATCCTTGGAATTCAACACTTTCATTCTACACACAATACAAACCATCCGACCTATGCAATTGTGCAAAAGGACTACACCGGCTTTTCTTGG--TTGGCCCTGGAGGCAACCTTCGAGCAGTTAGAGAAAAATACAGTCAACACAAGTACAAATTCGTA-GCAAAGAAGTACTCTCCACCATCAATTCCAGCAGAGTTTTTCGAAGATCCAAGCAGCTACAAGCCTGATTAACTCCAGTTACTCCCTGAAGTCTTGCAGTAGCCCCGAATGGTAGGCTGATTTGTACAGATTGCTCATGCGCAAGGCAAGCACACGCCACGCGCCCTTGTGTTAGCAGATTGGTAGATTGTACATTGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTATGCACGGCAAGTGCATTTCTCT-GGCGGCGGCTTGCTTACAACCACAGTGCATAAAGCTGCTAGTCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGTTACTGTAAACAAAATGGATATGCTGGATAAGAGATAAATGCCTGAGGGCAAGTGAAGTAAAAAAATATTTGTCCTTCT]

[+] EMBL AK103430             [AATCGGCGGAAAATGCAATTACTTGGTGTCGCTTGCCTGCTTATAGCTTCTAAGTATGAAGAGATATGCCCACCCCAAGTAGAAGAGCTCTGCTATATTTCTGACAATACATACACTAAGGATGAGGTTTTGAAAATGGAAGCTTCTGTCCTGAAATACTTGAAGTTTGAGATGACTGCACCTACAACAAAATGCTTTTTGAGGAGATTTCTACGAGCTGCTCAAGTATGCCATGAGGCTCCAGTTTTGCATCTTGAGTTCCTAGCTAATTACATTGCGGAGCTATCACTTCTGGAGTACAGCTTAATTTGCTATGTACCGTCACTTATAGCTGCGTCTTCTATTTTCTTGGCGAAGTTTATCCTTAAGCCAACAGAGAATCCTTGGAATTCAACACTTTCATTCTACACACAATACAAACCATCCGACCTATGCAATTGTGCAAAAGGACTACACCGGCTTTTCTTGG  TTGGCCCTGGAGGCAACCTTCGAGCAGTTAGAGAAAAATACAGTCAACACAAGTACAAATTCGTA GCAAAGAAGTACTCTCCACCATCAATTCCAGCAGAGTTTTTCGAAGATCCAAGCAGCTACAAGCCTGATTAACTCCAGTTACTCCCTGAAGTCTTGCAGTAGCCCCGAATGGTAGGCTGATTTGTACAGATTGCTCATGCGCAAGGCAAGCACACGCCACGCGCCCTTGTGTTAGCAGATTGGTAGATTGTACATTGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTATGCACGGCAAGTGCATTTCTCT GGCGGCGGCTTGCTTACAACCACAGTGCATAAAGCTGCTAGTCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGTTACTGTAAACAAAATGGATATGCTGGATAAGAGATAAATGCCTGAGGGCAAGTGAAGTATGAATATATTTGTCCTTCT]
[+] EMBL BI805465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tTTGGTTTTGCCCCCTGA GCACCCTTCGACCAGTTAGAGAAAAATACAGTCAACACAAGTACAAATTCGTATNCAAAGAAGTACTCTCCACCATCAATTCCANCAGAGTTTTTCGAAGATCCAAGCAGCTACAAGCCTGATTAACTCCAGTTACTCCCTGAAGTCTTCCAGTAGCCCCGAATGGTAGCCTGATTTGTACAGATTGCTCATGCGCAAGGCAAGCACACGCCACGCGCCCTTGTGTTAGCAGATTGGTAGATTGTACATTGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTATGCACGGCAAGTGCATTTCTCTCGGC GCNGCTTGCTTACAACCACAGTGCATAAAGCTGCTAGTCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGTTACTGTAAAC AAATGGATATGCTGGATAAGAGATAAATGCCTGAGGGCCAGTGAAGTAAAAAAA             ]
[+] EMBL BI805464             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACAAGTACAAATTCGTA GCAAAGAAGTACTCTCCACCATCAATTCCAGCAGAGTTTTTCGAAGATCCAAGCAGCTACAAGCCTGATTAACTCCAGTTACTCCCTGAAGTCTTGCAGTAGCCCCGAATGGTAGGCTGATTTGTACAGATTGCTCATGCGCAAGGCAAGCACACGCCACGCGCCCTTGTGTTAGCAGATTGGTAGATTGTACATTGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTATGCACGGCAAGTGCATTTCTCT GGCGGCGCCTTGCTTACAACCACAGTGCATAAAGCTGCTAGTCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGTTACTGTAAAC AAATGGATATGCTGCATAAGAGATAAATGCCTGAGGGCAACTGAAGTAAAAAAA             ]
[-] EMBL D42630               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAGATTGGTAGATTGTACATNGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTA GCACGGCAAGTGCATTTCTCT GGCGGCGGCTTGCTTACAACCACAGTGCATAAAGCTGCTAGTCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGTTACTGTAAACAAAATGGATATGCTGGATAAGAGATAAAT CCTGAGGGCAAG                          ]


>consensus_7274#0 AATCGGCGGAAAATGCAATTACTTGGTGTCGCTTGCCTGCTTATAGCTTCTAAGTATGAA GAGATATGCCCACCCCAAGTAGAAGAGCTCTGCTATATTTCTGACAATACATACACTAAG GATGAGGTTTTGAAAATGGAAGCTTCTGTCCTGAAATACTTGAAGTTTGAGATGACTGCA CCTACAACAAAATGCTTTTTGAGGAGATTTCTACGAGCTGCTCAAGTATGCCATGAGGCT CCAGTTTTGCATCTTGAGTTCCTAGCTAATTACATTGCGGAGCTATCACTTCTGGAGTAC AGCTTAATTTGCTATGTACCGTCACTTATAGCTGCGTCTTCTATTTTCTTGGCGAAGTTT ATCCTTAAGCCAACAGAGAATCCTTGGAATTCAACACTTTCATTCTACACACAATACAAA CCATCCGACCTATGCAATTGTGCAAAAGGACTACACCGGCTTTTCTTGGTTGGCCCTGGA GGCAACCTTCGAGCAGTTAGAGAAAAATACAGTCAACACAAGTACAAATTCGTAGCAAAG AAGTACTCTCCACCATCAATTCCAGCAGAGTTTTTCGAAGATCCAAGCAGCTACAAGCCT GATTAACTCCAGTTACTCCCTGAAGTCTTGCAGTAGCCCCGAATGGTAGGCTGATTTGTA CAGATTGCTCATGCGCAAGGCAAGCACACGCCACGCGCCCTTGTGTTAGCAGATTGGTAG ATTGTACATTGTAGATGAAGTGGTAGAGCTGTACATCAAGTTGGCCTCATTTGTGTATGC ACGGCAAGTGCATTTCTCTGGCGGCGGCTTGCTTACAACCACAGTGCATAAAGCTGCTAG TCCTTTCCTACTCTATCCATTTTGCTTGCTCCAAGCTTGTTTGATATGATTTTACCGTGT TACTGTAAACAAAATGGATATGCTGGATAAGAGATAAATGCCTGAGGGCAAGTGAAGTAA AAAAATATTTGTCCTTCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)