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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1842 fasta sequence
[GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT]
[+] EMBL AK071896 [GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT]
[+] EMBL AK104958 [ TCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAAATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCT ]
[+] EMBL OSC107381 [ TTTTGATGAGAAACGACGAGCTATGGGNTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTTGAGGCCTTGGAGGAGATAATG ]
consensusID : consensus_7276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[CGAGCNNNNNNACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACTGGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAGANNNANNNTAA]
[+] EMBL CF196657 [CGAGCNNNNNNACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACTGGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAGANNNANNNTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7276#0 GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCT 60
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTG 120
consensus_7276#1 CGAGCNNNNNNA--CACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTG 58
***** **********************************************
consensus_7276#0 CCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCC 180
consensus_7276#1 CCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCC 118
************************************************************
consensus_7276#0 CGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAAC 240
consensus_7276#1 CGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAAC 178
************************************************************
consensus_7276#0 GACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACT 300
consensus_7276#1 GACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACT 238
************************************************** * *****
consensus_7276#0 GGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAG 360
consensus_7276#1 GGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAG 298
****** ** ************************** ******* ****
consensus_7276#0 AACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCA 420
consensus_7276#1 ANNNANNNTAA------------------------------------------------- 309
* *
consensus_7276#0 AGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCA 480
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 TTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTG 540
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCAT 600
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 ATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAG 660
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAA 720
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 GAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCC 780
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 AGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGG 840
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 GCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATT 900
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAG 960
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATA 1020
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAA 1080
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 AAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGAC 1140
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 AATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCC 1200
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 TCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACA 1260
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 ACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTG 1320
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 TATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGG 1380
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 GAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATC 1440
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 AATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATG 1500
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 ATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAG 1560
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 TTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGAC 1620
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 ATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGT 1680
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 CCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTA 1740
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 TGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATAT 1800
consensus_7276#1 ------------------------------------------------------------
consensus_7276#0 AAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT 1842
consensus_7276#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||