cluster # 7280

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7280 cluster # 7280 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7280#0 length = 859 sequences # 3

consensus_7280#1 length = 455 sequences # 1

consensusID : consensus_7280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 859
fasta sequence

                              [ACAGCATTACTTTTGGACTTCTTCCTTTTGTATTC-AAATGTAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA-GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACCAATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACCTATCTCATCTACAATAACCACC]

[+] EMBL CB628276             [ACAGCATTACTTTTGGACTTCTTCCTTTTGTATTC AAATGTAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACCAATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACCTATCTCATCTACAATAACCACC]
[+] EMBL CB626778             [            TTGGACTTCTTCCTTTTGTACTCTTAATGGAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAG                                                                                         ]
[-] EMBL CA305800             [                                                                                                                                                                                                                                                                                                                                                                               TACATTAGTCCACAGGGATCCTGAGGNACGGGAACATGCAGTTTGATAAAAGCATCTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCAATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACANGTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGT                                                                                                   ]




>consensus_7280#0
ACAGCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTT
GAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCT
AATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTG
ATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACC
AGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTG
CCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAA
TAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCA
ACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCA
TCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTT
GCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTC
CCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTG
ACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACAGTTTCTACTCCTCCAATCAA
ATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACCAAT
AAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACCTAT
CTCATCTACAATAACCACC

consensusID : consensus_7280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACAGCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAATCCATACACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCATTGATGAACTGCCATTGAAACACAAAGGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATATAACCAATACACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACCCTATCATCATTCAGAGAAAAACGATTTTGAAAAAAAAAA]

[+] EMBL BI803722             [ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACAGCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAATCCATACACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCATTGATGAACTGCCATTGAAACACAAAGGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATATAACCAATACACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACCCTATCATCATTCAGAGAAAAACGATTTTGAAAAAAAAAA]




>consensus_7280#1
ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACA
GCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAA
TCCATACACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATT
GGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCATTGATGAA
CTGCCATTGAAACACAAAGGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAGAGG
CACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATATAACCAATACACAT
CATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACCCTAT
CATCATTCAGAGAAAAACGATTTTGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7280#0      ---------------------------------------------------------ACA 3
consensus_7280#1      ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACA 60
                                                                               ***

consensus_7280#0      GCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAA 63
consensus_7280#1      GCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAA 120
                      ************************************************************

consensus_7280#0      TCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAAT 123
consensus_7280#1      TCCATACA-CAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAAT 179
                      ******** ***************************************************

consensus_7280#0      TGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATG 183
consensus_7280#1      TGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCA-TTGATG 238
                      ***************************************************** ******

consensus_7280#0      AACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCA-AATGTTCACCAG 242
consensus_7280#1      AACTGCCATTGAAACACAAA-GGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAG 297
                      ******************** *************************  ************

consensus_7280#0      AGGCACCTATGCAGGATGTTTCACTTCATTTTCT--CA-ATGAACAGCACCAGTTCCTTT 299
consensus_7280#1      AGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATAT-AACCAATAC 356
                      **********************************  ** ****  *  *  *     *  

consensus_7280#0      GCCGGAGTAGCAGTACTATA-ACTTGACAAGTCTTTGGAATCAATACCA-ACAACACGCT 357
consensus_7280#1      ACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACC 416
                       *   * *  **** * * * *    * *  * * *    ****  * * **** *  * 

consensus_7280#0      GAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAA 417
consensus_7280#1      CTATCATCAT---TCAGAGAAAAACGATTTTGAAAAAAAAAA------------------ 455
                        ** *  **   * **   * *  ***  ***   *    *                  

consensus_7280#0      GCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGC 477
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      CCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTT 537
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      CTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCG 597
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      CTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTT 657
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      CTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACAGTTTCTACTCCTCCAAT 717
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      CAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACC 777
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      AATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACC 837
consensus_7280#1      ------------------------------------------------------------
                                                                                  

consensus_7280#0      TATCTCATCTACAATAACCACC 859
consensus_7280#1      ----------------------