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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1283 fasta sequence
[TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCAGCAGCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCCACACGGTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCATGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTAGTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATAAGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB658779 [TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCAGCAGCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCCACACGGTGAGCAGCAACTCCGATGTCAACCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCCTACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCGCCGTCGCCGCCGCCGCCGCCGCTGCAGCACTATGACGGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGTCCGCAACCCCTTGCTGTCGTCCTTCGACTG ]
[+] EMBL OSMYB1308 [ GTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCATGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTAGTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATAAGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061437 [ GTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCGCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACA ]
consensusID : consensus_7286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence
[GAAAGCATCCTACATACAGACAGATCGATCGATCGATCGATAACCAGATCAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTACATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCTATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGTAGCACAGAGAGAGACGACCGATCGATCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTGTAGCCATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCAATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATGAACTATAGCTAGCCAAGTAGCCATGGTGATCGATGATGAACTGAGAAGAAGCTGAAGCTGTGGGTGGATGGATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGAC]
[-] EMBL AK106719 [GAAAGCATCCTACATACAGACAGATCGATCGATCGATCGATAACCAGATCAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTACATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCTATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGTAGCACAGAGAGAGACGACCGATCGATCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTGTAGCCATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCAATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATGAACTATAGCTAGCCAAGTAGCCATGGTGATCGATGATGAACTGAGAAGAAGCTGAAGCTGTGGGTGGATGGATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7286#0 TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATC-CGGGAA 59
consensus_7286#1 ----------GAAAGCATCCTACATACAGA-CAGATCGATCGATCGATCGATAACCAGAT 49
*** * * ** * *** ** * * ************* * **
consensus_7286#0 GGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTG 119
consensus_7286#1 CAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTA 109
* ** * * * * *** * ** * * ** * * * * *
consensus_7286#0 CGACAAGGAGGGGA--TCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTC 177
consensus_7286#1 CATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCT 169
* ** ** * * * ** * * * ** ** *** * * ** **** *
consensus_7286#0 TCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTG 237
consensus_7286#1 ATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGT------AGCACAGAG--- 220
** *** ** * * * * * ** ** * * * ***** *
consensus_7286#0 ATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAG 297
consensus_7286#1 -------------AGAGACGACCGAT-CGATCGATCAGCTAGCTGCAGCTTCCAGAAAGA 266
**** * * * ** * ** * *** **** ** **
consensus_7286#0 CGCGGCAACTTCA-CGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGG 356
consensus_7286#1 GTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTG 326
* * ** * ** * ** ****** ** * * * *
consensus_7286#0 CAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAA 416
consensus_7286#1 TAGCCATGGGCCGGCCGCCGTGCT--------------GCGACAAGGAGGGGATCAAGAA 372
* ** ** * *** ** ** * * * * ********
consensus_7286#0 CTACTGGAACACCCAC-CTCAAGAAGAAGCTCGCCGCCGCCGCCAAC-TCCACTTCAGCA 474
consensus_7286#1 ----GGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACG 428
** ** ** * * ** ** * ** * ** * ** ** **** *
consensus_7286#0 GCCTC--CAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCC 532
consensus_7286#1 GCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCA------ 482
*** * **** * * * * * ** * *** * **
consensus_7286#0 ACACGGTGAGCAGCAACTC-CGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCC 591
consensus_7286#1 --ATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATG--AACTATAGCTAGCCAAGTAGCC 538
* ** * ** ** * * * ***** * * ** ***** * **
consensus_7286#0 TTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTC 651
consensus_7286#1 ATGGT-GATCGATGAT-----------GAACTGAGAAGAAGCTGAAGCTGTGGGTGGATG 586
* * ** * ** * ** * * * ** * * *
consensus_7286#0 GACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCA-GCACTATG- 709
consensus_7286#1 GATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCT 646
** ** * ** * * * * ** ** * * ** ** * * ****
consensus_7286#0 ACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGT 769
consensus_7286#1 GCGGCCGGGGATAAAGCG-CGGCAACTTCACGGCGCACGAGGAGGGGA-----TCATCGT 700
* ** * ** ** ** *** * * * * * * ** * * **
consensus_7286#0 CGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTG----CTTCGACGTTCATCAG 825
consensus_7286#1 CCACCTCCAGTCGCTTCTCGGCAACCG--CTGGGCCGCCATCGCCTCCTACCTCCCCCAG 758
* *** * ** * ** * *** **** * ** ** * ** * * ***
consensus_7286#0 CAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTAC 885
consensus_7286#1 C-GCACCGACAACGACATCAAGAACTAC---TGGAACACC-CACCTCAAGAAGAAGCT-C 812
* ***** ** * ** * * **** ** * ** * * *** *
consensus_7286#0 GGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAG 945
consensus_7286#1 GCCGCCGCC-GCCAACTCCACTTCATCCTCCAA-CCGCCACCCCATCTTCGCCGAC---- 866
* ** ** ** * * ** * ** *** * ** * ** ** ***
consensus_7286#0 AAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGAC 1005
consensus_7286#1 ------------------------------------------------------------
consensus_7286#0 GGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTC 1065
consensus_7286#1 ------------------------------------------------------------
consensus_7286#0 ACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCA 1125
consensus_7286#1 ------------------------------------------------------------
consensus_7286#0 TGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTA 1185
consensus_7286#1 ------------------------------------------------------------
consensus_7286#0 GTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATA 1245
consensus_7286#1 ------------------------------------------------------------
consensus_7286#0 AGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA 1283
consensus_7286#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||