These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence [GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTAGCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGATCTCTGGACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTG] [+] EMBL CA764224 [GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTAGCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAAATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATACGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGATCTCTGGACCACATGAGTAAAACAGCAGAAG ] [+] EMBL CB000018 [ TAGAGATCTAAAGACAAGCAACATTTTGTTGGACCCTGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTTCATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCAT GAGATCAA GATCTCTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTG] [+] EMBL CA999502 [ AGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAA ] consensusID : consensus_7303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [ACGAGTCCTCAAATATCACATTTGCGCCGGCCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATATGGTTCCATGTTCCCTAAATCGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTATAGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAGATCAAGATCTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA] [-] EMBL CA759479 [ACGAGTCCTCAAATATCACATTTGCGCCGGCCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATATGGTTCCATGTTCCCTAAATCGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTATAGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAGATCAAGATCTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7303#0 GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTA 60 consensus_7303#1 ------------------------------------------------------------ consensus_7303#0 GCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTA 120 consensus_7303#1 ------------------------------------------------------------ consensus_7303#0 AAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATG 180 consensus_7303#1 ------------------------------ACGAGTCCTCAAATATCACATTTGCGCCGG 30 * ******* ******** **** ** * consensus_7303#0 GCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATAT 240 consensus_7303#1 CCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATAT 90 **** * ****** * ***** **** * ** * ******* ***** ***** consensus_7303#0 GGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTAT 300 consensus_7303#1 GGTTCCATGTTCCCTAAAT-CGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTAT 149 **** ***** *** *** ** ** ** *********** ****************** consensus_7303#0 AGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTC 360 consensus_7303#1 AGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTC 209 ** ************* ** **************************************** consensus_7303#0 AAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCA 420 consensus_7303#1 AAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCA 269 ********************** ************************************* consensus_7303#0 AGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGT 480 consensus_7303#1 AGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGT 329 ******************************************************* **** consensus_7303#0 ATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCC 540 consensus_7303#1 ATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCC 389 ************************************************************ consensus_7303#0 ATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATAT 600 consensus_7303#1 ATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATAT 449 **** * ******************** ** **** *********************** consensus_7303#0 TTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGAT 660 consensus_7303#1 TTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAG-ATCAAG-AT 507 ************************************************ * ****** ** consensus_7303#0 CTCTGGACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTAC 720 consensus_7303#1 CTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTAC 567 ** ** ****************************************************** consensus_7303#0 AGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTT 780 consensus_7303#1 AGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTT 627 ************************************************************ consensus_7303#0 AAAAAGGTTCTACTG------------------------ 795 consensus_7303#1 AAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA 666 *************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||