cluster # 7306

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7306 cluster # 7306 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7306#0 length = 618 sequences # 3

consensus_7306#1 length = 464 sequences # 1

consensusID : consensus_7306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 618
fasta sequence

                              [GCAGAGTTTATGGAGCGGTCAGCCACGCACTAATCATCTAACATGAGATCCGAACAATTTATACGCTACGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAATTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTCTTTTTTCCCCCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTATACTAGTCACTTGTCCTCTGTACACCAGTTTCCTTTTTTTTTTCTGCCTTCATTTGAAACCTCTGACAGCCACGGTCAGGTTCTTTACAAGCTCAACCGCTGTCGAAAAACCCTCTTCGATCTGCACAAAACATAAACCTGTCAAAACCAGCTATAACAACAACCATCTAATTACAATTTTACAGCCACATTTACACA]

[+] EMBL CB639305             [GCAGAGTTTATGGAGCGGTCAGCCACGCACTAATCATCTAACATGAGATCCGAACAATTTATACGCTACGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAATTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTCTTTTTTCCCCCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTATACTAGTCACTTGTCCTCTGTACACCAGTTTCCTTTTTTTTTTCTGCCTTCATTTGAAACCTCTGACAGCCACGGTCAGGTTCTTTACAAGCTCAACCGCTGTCGAAAAACCCTCTTCGATCTGCACAAAACATAAACCTGTCAAAACCAGCTATAACAACAACCATCTAATTACAATTTTACAGCCACATTTACACA]
[-] EMBL CB640378             [                                                                                                                                                                                                     TAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGC                                                                                                                                                                                                                                            ]
[-] EMBL CB639306             [                                                                                                                                                                                                         ATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGC                                                                                                                                                                                                                                            ]




>consensus_7306#0
GCAGAGTTTATGGAGCGGTCAGCCACGCACTAATCATCTAACATGAGATCCGAACAATTT
ATACGCTACGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAA
TTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTCTT
TTTTCCCCCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAA
TCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTA
AAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTT
GATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTA
TACTAGTCACTTGTCCTCTGTACACCAGTTTCCTTTTTTTTTTCTGCCTTCATTTGAAAC
CTCTGACAGCCACGGTCAGGTTCTTTACAAGCTCAACCGCTGTCGAAAAACCCTCTTCGA
TCTGCACAAAACATAAACCTGTCAAAACCAGCTATAACAACAACCATCTAATTACAATTT
TACAGCCACATTTACACA

consensusID : consensus_7306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GTTTTTGGTTTGGGCGGCATTTTGGTCTCCTTGGGGGTGTGGATCAGGGTATACGCTCGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAATTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTTTTTTTATCCTCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCATTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTATACTAGTCACTTGTCCTCTGTACACCAGATTCCTTTTTTATTTCTGCCTTCATTT]

[+] EMBL CB640376             [GTTTTTGGTTTGGGCGGCATTTTGGTCTCCTTGGGGGTGTGGATCAGGGTATACGCTCGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAATTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTTTTTTTATCCTCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCATTCTTAGTTGCTCTTGATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTATACTAGTCACTTGTCCTCTGTACACCAGATTCCTTTTTTATTTCTGCCTTCATTT]




>consensus_7306#1
GTTTTTGGTTTGGGCGGCATTTTGGTCTCCTTGGGGGTGTGGATCAGGGTATACGCTCGT
ACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAATTGTACATTTT
TTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTTTTTTTATCCTCCT
ACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAATCTATATATTC
ATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTAAAAGGCTAAAA
AGGCTAAAAAAGTCCTAAAACCAACCCTAAATCATTCTTAGTTGCTCTTGATCATTTTGG
TTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTATACTAGTCACT
TGTCCTCTGTACACCAGATTCCTTTTTTATTTCTGCCTTCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7306#0      GCAGAGTTTATGGAGCGGTCAGCCACGCACTAATCATCTAACATGAGATCCGAACAATTT 60
consensus_7306#1      -----GTTTTTGGTTTGGGCGGC---ATTTTGGTCTCCT--TGGGGGTGTGGATCAGGGT 50
                           **** ***   ** * **       *  **  **     * *    ** **   *

consensus_7306#0      ATACGCTACGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAA 120
consensus_7306#1      ATACGCT-CGTACTTCTTCGAATGAATCAATACATCTTTGGTCTCTTCATATAATGCCAA 109
                      ******* ****************************************************

consensus_7306#0      TTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTCTT 180
consensus_7306#1      TTGTACATTTTTTACGTACATAATACCAGGGGCGGAGACAGCGTGGGGGCGGAGGGTTTT 169
                      ********************************************************* **

consensus_7306#0      TTTTCCCCCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAA 240
consensus_7306#1      TTTATCCTCCTACCCCCTAATATACCATTAGAGCCCCCATAATACCCCCTAAAATTATAA 229
                      ***  ** ****************************************************

consensus_7306#0      TCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTA 300
consensus_7306#1      TCTATATATTCATATATGAGGGGCTAATATAGACTTTGTTTGAGGTTGTTAAAATGCTTA 289
                      ************************************************************

consensus_7306#0      AAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCTCTCTTAGTTGCTCTT 360
consensus_7306#1      AAAGGCTAAAAAGGCTAAAAAAGTCCTAAAACCAACCCTAAATCATTCTTAGTTGCTCTT 349
                      ********************************************  **************

consensus_7306#0      GATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTA 420
consensus_7306#1      GATCATTTTGGTTTAGCCCCGCTATAATTTTTTCCTGGATCCGCCACTGCATAATACTTA 409
                      ************************************************************

consensus_7306#0      TACTAGTCACTTGTCCTCTGTACACCAGTTTCCTTTTTTTTTTCTGCCTTCATTTGAAAC 480
consensus_7306#1      TACTAGTCACTTGTCCTCTGTACACCAGATTCCTTTTTTATTTCTGCCTTCATTT----- 464
                      **************************** ********** ***************     

consensus_7306#0      CTCTGACAGCCACGGTCAGGTTCTTTACAAGCTCAACCGCTGTCGAAAAACCCTCTTCGA 540
consensus_7306#1      ------------------------------------------------------------
                                                                                  

consensus_7306#0      TCTGCACAAAACATAAACCTGTCAAAACCAGCTATAACAACAACCATCTAATTACAATTT 600
consensus_7306#1      ------------------------------------------------------------
                                                                                  

consensus_7306#0      TACAGCCACATTTACACA 618
consensus_7306#1      ------------------