These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTCGTC] [-] EMBL AU172394 [TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGG ] [+] EMBL CA763570 [ tttttttttTTTTTTTAAAATAACCAAACTAAGAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCAT CGCCCATGTTCA TATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTCGTC] consensusID : consensus_7308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence [AAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCAT-CAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCGAGCGAGCTGCGCTTTCTCGGAGCGG] [-] EMBL AU069639 [AAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCAT CAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGC ] [-] EMBL OS0048A [ CTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATGCAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCGAGCGAGCTGCGCTTTCTCGGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7308#0 TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAAT 60 consensus_7308#1 ------------------------------------------------------------ consensus_7308#0 CTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGA 120 consensus_7308#1 ------------------------------------------------------------ consensus_7308#0 CATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATC 180 consensus_7308#1 ------------------------------------------------------------ consensus_7308#0 TCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAA 240 consensus_7308#1 ------------------------------------------------------------ consensus_7308#0 CAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAA 300 consensus_7308#1 -----------------------------------------------------------A 1 * consensus_7308#0 AGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGT 360 consensus_7308#1 AGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGT 61 ************************************************************ consensus_7308#0 TTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAG 420 consensus_7308#1 TTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAG 121 ********************************************************* ** consensus_7308#0 GTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGT 480 consensus_7308#1 GTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGT 181 ************************************************************ consensus_7308#0 GTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTC 540 consensus_7308#1 GTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTC 241 ************************ *********************************** consensus_7308#0 GATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTC 600 consensus_7308#1 GATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCATCTTGGCGGC 301 ************************************************* * * * * consensus_7308#0 GTC--------------------------------------------------------- 603 consensus_7308#1 GGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCG 361 * consensus_7308#0 ------------------------- consensus_7308#1 AGCGAGCTGCGCTTTCTCGGAGCGG 386 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||