cluster # 731

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Oryza sativa
cluster # 731 cluster # 731 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_731#0 length = 633 sequences # 1

consensus_731#1 length = 477 sequences # 1

consensusID : consensus_731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGCGTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCCGGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCAGGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGGCGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA]

[+] EMBL AU094701             [TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGCGTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCCGGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCAGGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGGCGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA]




>consensus_731#0
TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGC
GTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCC
GGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCA
GGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGG
CGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAA
GAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTG
CTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCA
TCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTG
GTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATA
TGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTAT
ATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA

consensusID : consensus_731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [GCAAGGAGGGAGGCGGCGGCGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTAATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA]

[+] EMBL AU029356             [GCAAGGAGGGAGGCGGCGGCGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTAATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA]




>consensus_731#1
GCAAGGAGGGAGGCGGCGGCGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCA
AGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACA
CCAAGTGTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACTGCGGCTAGCTCGTTCTTGCC
GCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAG
CTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGT
GCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTT
CTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAA
ATGTGGTTACGAGTTTAATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_731#0      TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGC 60
consensus_731#1      ------------------------------------------------------------
                                                                                 

consensus_731#0      GTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCC 120
consensus_731#1      ------------------------------------------------------------
                                                                                 

consensus_731#0      GGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCA 180
consensus_731#1      ------------------------------------------------------------
                                                                                 

consensus_731#0      GGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGG 240
consensus_731#1      -----------------------------------------GCAAGGAGGGAGGCGGCGG 19
                                                              *******************

consensus_731#0      CGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAA 300
consensus_731#1      CGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAA 79
                     ** *********************************************************

consensus_731#0      GAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTG 360
consensus_731#1      GAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTG-TCCGCCAAGTG 138
                     ************************************************ ***********

consensus_731#0      CTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCA 420
consensus_731#1      CTCCAAGTCCTGCATCCCCAC-TGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCA 197
                     ********************* **************************************

consensus_731#0      TCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTG 480
consensus_731#1      TCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTG 257
                     ************************************************************

consensus_731#0      GTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATA 540
consensus_731#1      GTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATA 317
                     ************************************************************

consensus_731#0      TGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTAT 600
consensus_731#1      TGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTAT 377
                     ************************************************************

consensus_731#0      ATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA--------------------------- 633
consensus_731#1      ATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTA 437
                     ****************** *    *                                   

consensus_731#0      ----------------------------------------
consensus_731#1      ATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA 477