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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 812 fasta sequence
[AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]
[+] EMBL BI305531 [AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAAAAAGCATTTGCTCGGATGGTTCAAAATATCAAAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCT ]
[+] EMBL CB653125 [ AAAAACTAGATCAGTTGAATTCCTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACCAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]
[+] EMBL CB628797 [ AAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACGAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAGTGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]
consensusID : consensus_7317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT]
[+] EMBL CB652875 [GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7317#0 -----------AAACAATTTCCCAATTG-AAATGTTTGTTCTTTTTCTTTTTAAAAGAAA 48
consensus_7317#1 GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGC 60
* ** * **** *** * * * ** ** *
consensus_7317#0 AAAACTAGATCAGTTGAATTATTTCAACCCT-CATGCGTGACAGATTGACAATGATA--- 104
consensus_7317#1 TATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCT 120
* ** * * * * *** *** * ***** *** **** * ***
consensus_7317#0 -----AGCACAGTTTGGACTTTGG-ACCAACATGAAAAGCAAACGAGAACTCAGGCTGCA 158
consensus_7317#1 TCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATA 180
* **** ** * ** ** **** *** ** * * ** *
consensus_7317#0 AATC--CAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGT 216
consensus_7317#1 CACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGT 240
* * ** * *** * * ** * * * ** * * * **
consensus_7317#0 CAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTT-CA--AAATATCAG 273
consensus_7317#1 CTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAG 300
* * * * * **** * ** * * * * ** ** ****** **
consensus_7317#0 AGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCC 333
consensus_7317#1 CTATAGTTAGGGATGT--CCG--GGCTCTAATTTTTTCTGGATCCACCACTGGATTTATA 356
* * * ** * *** **** ** * ** *** * * *
consensus_7317#0 GGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCT 393
consensus_7317#1 GGCTATCAG---CCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGA 413
** * * * * * ***** * ** * * * * **
consensus_7317#0 CTCCAATGGCCATTTG-CATCCGAT--GGACCAGGATCCTTTGCAGTTCTGAATTCTGAA 450
consensus_7317#1 AAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAA 473
** * ** * * * * ** * ***********************
consensus_7317#0 GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 510
consensus_7317#1 GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 533
************************************************************
consensus_7317#0 CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 570
consensus_7317#1 CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 593
************************************************************
consensus_7317#0 ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 630
consensus_7317#1 ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 653
************************************************************
consensus_7317#0 GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 690
consensus_7317#1 GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 713
************************************************************
consensus_7317#0 ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 750
consensus_7317#1 ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 773
************************************************************
consensus_7317#0 GGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGC 810
consensus_7317#1 GGTAATAGACTGATAAT------------------------------------------- 790
*****************
consensus_7317#0 TT 812
consensus_7317#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||