These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1263 fasta sequence [GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAATGTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGCATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCGGATAGGGTGGAAATGAAAGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGTAGTCAGATTTGATGAGATTGATGATTTAGTTATCAAAGTTTTGAAGTTCCTCTCTGCATTCAGTATTCGTTTCAGTTTCGAGTAGCGTTTAAAAGTTTAGCTGTCCATGGATCTACTACTCTATCACCATTCAGAGGGTTGGTTCTTAATTTGCAGTGACTGACGAGGGTGCCGTGTTCTGTCTGTAGGTATCATGTCAGTTCCAGCCATAGCCCGTAGGGACGGTTTAGAACTGACGAAATGACCTAGTCAGAATTTGTAATTGCAGGGCCCTAAAAGGGATGTGGAAGTGTAGGTAATCTAGTTAGGCCTTATATACCACCCAACTATTCTATGCTATGTCTTTTGGACTCTAGTTTAACTCGGATTCATTCTCTCTGGGAAGATATGAATCTGCTACCTTGAGCATAGCTGGCTCTGTCAATATTGCTCCGCCTGAAATGTTTAATGAGGGGAGTAGTATGCACATTTGATACCCTCTATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTCTTGTCCATATTCGAAGTTGTCTTG] [+] EMBL AK067328 [GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAATGTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGCATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCGGATAGGGTGGAAATGAAAGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGTAGTCAGATTTGATGAGATTGATGATTTAGTTATCAAAGTTTTGAAGTTCCTCTCTGCATTCAGTATTCGTTTCAGTTTCGAGTAGCGTTTAAAAGTTTAGCTGTCCATGGATCTACTACTCTATCACCATTCAGAGGGTTGGTTCTTAATTTGCAGTGACTGACGAGGGTGCCGTGTTCTGTCTGTAGGTATCATGTCAGTTCCAGCCATAGCCCGTAGGGACGGTTTAGAACTGACGAAATGACCTAGTCAGAATTTGTAATTGCAGGGCCCTAAAAGGGATGTGGAAGTGTAGGTAATCTAGTTAGGCCTTATATACCACCCAACTATTCTATGCTATGTCTTTTGGACTCTAGTTTAACTCGGATTCATTCTCTCTGGGAAGATATGAATCTGCTACCTTGAGCATAGCTGGCTCTGTCAATATTGCTCCGCCTGAAATGTTTAATGAGGGGAGTAGTATGCACATTTGATACCCTCTATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTCTTGTCCATATTCGAAGTTGTCTTG] consensusID : consensus_7327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence [GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCGTAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAATGTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGCATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCGGATAGGGTGGAAATGAAAGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGTAGTCAGATTTGATGAGATTGATGATTTAGTTATCAAGTTTTGAAGTTCCTCTCTGCATTCAGTATTCGTAAGCTAACTAGCAACACTATTCATTCTTTC] [+] EMBL AK070599 [GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCGTAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAATGTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGCATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCGGATAGGGTGGAAATGAAAGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGTAGTCAGATTTGATGAGATTGATGATTTAGTTATCAAGTTTTGAAGTTCCTCTCTGCATTCAGTATTCGTAAGCTAACTAGCAACACTATTCATTCTTTC] consensusID : consensus_7327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GTAACCCTAACAGGTGCATGCTTCCGGAAGCTTTATCACAGGGCAAGAAGTTGGTGTTGGAAGTTGAGGAACAAGATTTTAATTTCAAAATGTACTGGCAACGTTGCCCTACATTTAGCAAGTTGAAGACTTTGTTTATCAGTGTGTGCATATCAGCGATTCTTGACTTTGAAGGACTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGATCCTCACTCTTCAGTTTCATCGCTCGGAATTTAGACAAAAAGATAAGGTGGAAATGAAAGGAAGCTATAGTCGCATGGAGAAGTCATCTGCAATATCAGAACATCTTAAGATAGTCGCAATCCAATGTGATGATATAGATGATCAAGTTATCAAAGTTTTGAAGTTACTGTCTACATTTAGTATTCGTAAGCTGACTAGCAACGCTATTCACTCTTTCTGTATTTCTTAAAATTGCCTTCAGCTTTCATGTGTGTGAAAGAAGTAATGCATACTCCTAATTTGATAGAAAAATCAAGAAATAGGAGTTCAAATTGAAAAGGCAATGAAAATCCTGCCCTGTATTTGGTGGTAGTGAGGAACTAATTCTATTCCATCGTATTGCCAGATACTATGCATAAAGCTATTTGAGGTCTATTTATTGTGAACTACATTGAATAAACAGTTAGTTGATTCATTGATCTGTCAAAAAAAAAAAA] [-] EMBL CA759367 [GTAACCCTAACAGGTGCATGCTTCCGGAAGCTTTATCACAGGGCAAGAAGTTGGTGTTGGAAGTTGAGGAACAAGATTTTAATTTCAAAATGTACTGGCAACGTTGCCCTACATTTAGCAAGTTGAAGACTTTGTTTATCAGTGTGTGCATATCAGCGATTCTTGACTTTGAAGGACTTAGTTGCATCCTTCGACACTCACCAGTTCTAGAGATCCTCACTCTTCAGTTTCATCGCTCGGAATTTAGACAAAAAGATAAGGTGGAAATGAAAGGAAGCTATAGTCGCATGGAGAAGTCATCTGCAATATCAGAACATCTTAAGATAGTCGCAATCCAATGTGATGATATAGATGATCAAGTTATCAAAGTTTTGAAGTTACTGTCTACATTTAGTATTCGTAAGCTGACTAGCAACGCTATTCACTCTTTCTGTATTTCTTAAAATTGCCTTCAGCTTTCATGTGTGTGAAAGAAGTAATGCATACTCCTAATTTGATAGAAAAATCAAGAAATAGGAGTTCAAATTGAAAAGGCAATGAAAATCCTGCCCTGTATTTGGTGGTAGTGAGGAACTAATTCTATTCCATCGTATTGCCAGATACTATGCATAAAGCTATTTGAGGTCTATTTATTGTGAACTACATTGAATAAACAGTTAGTTGATTCATTGATCTGTCAAAAAAAAAAAA] consensusID : consensus_7327#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [TATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTCTTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCTTCCAAACTTTTTTTTAAAAAGGGGGGAAATTCGGGGCCCAAAAAAAAAATCCCCCCTA] [+] EMBL CF302620 [TATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTCTTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCTTCCAAACTTTTTTTTAAAAAGGGGGGAAATTCGGGGCCCAAAAAAAAAATCCCCCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7327#0 GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGC 60 consensus_7327#1 GAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGC 60 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 CAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAA 120 consensus_7327#1 CAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAA 120 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 AACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATG 180 consensus_7327#1 AACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATG 180 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 CACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGC 240 consensus_7327#1 CACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGC 240 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 GACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATC 300 consensus_7327#1 GACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCGTAAAACACCTAAACATC 300 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCA 360 consensus_7327#1 TCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCA 360 consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 CTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGC 420 consensus_7327#1 CTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGC 420 consensus_7327#2 --------------------------GTAACCCTAA--CAGGTGCATGCT-TCCGGAAGC 31 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAAT 480 consensus_7327#1 TTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAATTTCGAAAT 480 consensus_7327#2 TTTATCACAGGGCAAGAAGTTGGTGTTGGAAGTTGAGGAACAAGATTTTAATTTCAAAAT 91 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 GTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGC 540 consensus_7327#1 GTACTGGCAACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTAATCAGTGCATGCGC 540 consensus_7327#2 GTACTGGCAACGTTGCCCTACATTTAGCAAGTTGAAGACTTTGTTTATCAGTGTGTGCAT 151 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 ATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGA 600 consensus_7327#1 ATCTGCTGTTCTTGACTTTGAAGCTGTTAGTTGCATCCTTCGACACTCACCAGTTCTAGA 600 consensus_7327#2 ATCAGCGATTCTTGACTTTGAAGGACTTAGTTGCATCCTTCGACACTCACCAGTTCTAGA 211 consensus_7327#3 -----------------------------------TATCCCAAAATATAAAAAC-CTATA 24 * * * * * * *** * consensus_7327#0 GAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCG---GATAGGGTGGAAATGAA 657 consensus_7327#1 GAATCTCACTCTTCAGTTTCATCGCATGGGACATGGACCG---GATAGGGTGGAAATGAA 657 consensus_7327#2 GATCCTCACTCTTCAGTTTCATCGCTCGGAATTTAGACAAAAAGATAAGGTGGAAATGAA 271 consensus_7327#3 GTACTATATGTGATATTCTTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 84 * * * * * ** * * * * *** ** consensus_7327#0 AGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGT 717 consensus_7327#1 AGGAAGCTATAGTCGAATGGATAGGTCATCTGCAATATCAGAATATCTTAAGATAGTTGT 717 consensus_7327#2 AGGAAGCTATAGTCGCATGGAGAAGTCATCTGCAATATCAGAACATCTTAAGATAGTCGC 331 consensus_7327#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 144 * ** * * * * * * ** * * ** * ** * * consensus_7327#0 AGTCAGATTTGATGAGATTGATGATTTAGTTATCAAAGTTTTGAAGTTCCTCTCTGCATT 777 consensus_7327#1 AGTCAGATTTGATGAGATTGATGATTTAGTTATCAA-GTTTTGAAGTTCCTCTCTGCATT 776 consensus_7327#2 AATCCAATGTGATGATATAGATGATCAAGTTATCAAAGTTTTGAAGTTACTGTCTACATT 391 consensus_7327#3 AAATTTTAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCTTCCAAACTTTTTTTTAAAAA 204 * * * * * * * ** ** * * * * * consensus_7327#0 CAGTATTCGTTTCAGTTTCGAGTAGCGTTTAAAAGTTTAGCTGTCCATGGATCTACTACT 837 consensus_7327#1 CAGTATTCGTAA-GCTAACTAGCAACACTATTCATTCTTTC------------------- 816 consensus_7327#2 TAGTATTCGTAA-GCTGACTAGCAACGCTATTCACTCTTTCTGT--ATTTCTTAAAATTG 448 consensus_7327#3 GGGGGGAAATTC-GGGGCCCAAAAAAAAAATCCCCCCTA--------------------- 242 * * * * * * consensus_7327#0 CTATCACCATTCAGAGGGTTGGTTCTTAATTTGCAGTGACTGACGAGGGTGCCGTGTTCT 897 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 CCTTCAGCTTTCATGTGTGTGAAAGAAGTAATGCATACTCCTAATTTGATAGAAAAATCA 508 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 GTCTGTAGGTATCATGTCAGTTCCAGCCATAGCCCGTAGGGACGGTTTAGAACTGACGAA 957 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 AGAAATAGGAGTTCAAATTGAAAAGGCAATGAAAATCCTGCCCTGTATTTGGTGGTAGTG 568 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 ATGACCTAGTCAGAATTTGTA--ATTGCAGGGCCCTAAAAGGGATGTGGAAGTGTAGGTA 1015 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 AGGAACTAATTCTATTCCATCGTATTGCCAGATACTATGCATAAAGCTATTTGAGGTCTA 628 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 ATCTAGTTAGGCCTTATATACCACCCAACTATTCTATGCTATGTCTTTTGGACTCTAGTT 1075 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 TTTATTGTGAACTACATTGAATAAACAGTTAGTTGATTCATTGATCTGTCAAAAAAAAAA 688 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TAACTCGGATTCATTCTCTCTGGGAAGATATGAATCTGCTACCTTGAGCATAGCTGGCTC 1135 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 AA---------------------------------------------------------- 690 consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TGTCAATATTGCTCCGCCTGAAATGTTTAATGAGGGGAGTAGTATGCACATTTGATACCC 1195 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TCTATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTCTTGTCCATATTCGAAG 1255 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#3 ------------------------------------------------------------ consensus_7327#0 TTGTCTTG 1263 consensus_7327#1 -------- consensus_7327#2 -------- consensus_7327#3 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||