cluster # 7334

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Oryza sativa
cluster # 7334 cluster # 7334 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7334#0 length = 489 sequences # 1

consensus_7334#1 length = 431 sequences # 3

consensusID : consensus_7334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCTGCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCGCCCCCCTCCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGTGCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGCCGGAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCGCCTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAATTCGTCCTAAAAAAAA]

[+] EMBL BI804223             [ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCTGCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCGCCCCCCTCCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGTGCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGCCGGAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCGCCTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAATTCGTCCTAAAAAAAA]




>consensus_7334#0
ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCT
GCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCG
CCCCCCTCCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGTGC
CGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGCCG
GAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCGC
CTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAG
TGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCC
TCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAATTCGTCC
TAAAAAAAA

consensusID : consensus_7334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 431
fasta sequence

                              [CTCTTTANCCCCTCCATCCCTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTC-TGGCCGCTGCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGTGGCCGTCCTGCTCCGGATCTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGGCAAGGAGCTCATNGACTTCGTGCCGGGTGCCGN]

[+] EMBL OS0179A              [CTCTTTANCCCCTCCATCCCTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTCTTGGCCGCTGCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGT                                                                                       ]
[+] EMBL C74689               [   ctcnNCCCCTCCATCCCTTTCCCCACNCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAAGCGGCGGNCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGNCATCGGGGCCAGGCTCGGCGCCGTGGTCTCCTTCTTN TGGGCGCTGCTCGTnt                                                                                                                ]
[+] EMBL OS1049A              [                                                                                                                      TCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTC TGGCCGCTGCTCGTCTCCACGGGGTTCTTCCTCGTGGCCGTGGCCGTCCTGCTCCGGATCTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGGCAAGGAGCTCATNGACTTCGTGCCGGGTGCCGN]




>consensus_7334#1
CTCTTTANCCCCTCCATCCCTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGG
CCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTC
TAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAAT
AAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTG
GCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTC
TTCTGGCCGCTGCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGTGGCCGTCCTGCTCCGG
ATCTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGGCAAGGAGCTCATNGACTTCGTG
CCGGGTGCCGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7334#0      ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCT 60
consensus_7334#1      -----------------------------------------CTCTTTANCCCCTCCATCC 19
                                                               * * *   * *** * ** 

consensus_7334#0      GCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCG 120
consensus_7334#1      CTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCG 79
                            *   ** ***   *   *  ** * *  **    * *     **  * *  ***

consensus_7334#0      CCCCCCT--CCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGT 178
consensus_7334#1      TAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTC-TAGATCTCTCTCTCGCGG 138
                            *  * ** * *     * **   *  *  * **** * **  **     ** * 

consensus_7334#0      GCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGC 238
consensus_7334#1      GGCGCTGGGCAGATCGACCT-----GGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGG 193
                      * ***  **   * *  **      ****  ** * **   * * *   **    **** 

consensus_7334#0      CGGAGATCTAGAA--AATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCG 296
consensus_7334#1      TAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTG-GCGCTGGTGGCGGCCACGGTG 252
                          *    ** *      *  ** ***** ***** * * ** *  *****   * * *

consensus_7334#0      GCGCC--TCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACC 354
consensus_7334#1      GTGTCGATCTCCGCCAT-CGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTCTGGCCGCT 311
                      * * *  **  ****   ** *    ** *  * *  **  ** **  * *  * ** * 

consensus_7334#0      TGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGAT 414
consensus_7334#1      -----GCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGTGGCCGTCCTGCT----CCGGAT 362
                           *  ***     *   * * * *   * * ****** *    ** *      ****

consensus_7334#0      TCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAAT 474
consensus_7334#1      CTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGG---CAAGGAGCTCATNG----ACT 415
                         ***  * ** *    *    *  ** *  **     ***  *   *** *    * *

consensus_7334#0      TCGTCCTAAAAAAAA- 489
consensus_7334#1      TCGTGCCGGGTGCCGN 431
                      **** *