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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1347 fasta sequence
[TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCGGAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACACCGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGATGGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCACCGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTGTGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAATTGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTTTCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTATCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCTATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATTAATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAATATATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGCGGTGAAGAGGAGGATATGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTGTATA--GTGTGTCTGAATGTAACAGAACCCGTGTGTAAAAGAAAATATTG-TCAATAGAGGCTACAATGTTAACTGGTAGCTTGGTTTTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA]
[+] EMBL AK106625 [TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCGGAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACACCGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGATGGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCACCGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTGTGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAATTGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTTTCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTATCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCTATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATTAATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAATATATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGCGGTGAAGAGGAGGATATGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTGTATA GTGTGTCTGAATGTAACAGAACCCGTGTGTAAAAGAAAATATTG TCAATAGAGGCTACAATGTTAACTGGTAGCTTGGTTTTC ]
[+] EMBL BM420754 [ TGCCAGGAACAC ATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACATGGGAAACATTGTCGCTAGCGCCGGAGC GCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGTGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCC TNGTAATTTTTTTACTTTTGAGTTTAACCATGTAATTTGTTTATTGTATAGTGTGTGTCTGAATGTAAC GAACCCGTGTGTAAAAGAAAATATTGTTAAATAGA GCTACAATGTTAACTGNTAGCTT GTTGTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA]
consensusID : consensus_7336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAAAACATTTTCCCCTGTTGGACGGCGACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTTGAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTACGGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCAGTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCCGTGTAGCGGTTGTAGTCAATTGAAATCTATTTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAGCGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGCACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT]
[+] EMBL AU031528 [TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAAAACATTTTCCCCTGTTGGACGGCGACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTTGAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTACGGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCAGTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCCGTGTAGCGGTTGTAGTCAATTGAAATCTATTTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAGCGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGCACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT]
consensusID : consensus_7336#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[TCAATTGAAATCTATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATCCTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGACGATGGATCCCGCGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTGTATAGTGTGTCCAGTGGCGAACCCAGAACAAAAATTACTGGGGTCCAATATATACTAATTATCTAATTATTAACTAATAAAAA]
[+] EMBL AU031529 [TCAATTGAAATCTATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATCCTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGACGATGGATCCCGCGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTGTATAGTGTGTCCAGTGGCGAACCCAGAACAAAAATTACTGGGGTCCAATATATACTAATTATCTAATTATTAACTAATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7336#0 TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCG 60
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 GAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACAC 120
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 CGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGAT 180
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 GGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCAC 240
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 CGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCC 300
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 CGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACA 360
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGG 420
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTG 480
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAAT 540
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCA 600
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 AAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTT 660
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTA 720
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 TCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCT 780
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 ------------------------------------------------------------
consensus_7336#0 ATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATT 840
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 -------TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTT 53
consensus_7336#0 AATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAA-TA 899
consensus_7336#2 ------------------------------------------------TCAATTGAAATC 12
consensus_7336#1 CCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAA--AACATT 111
** * *
consensus_7336#0 TATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGT- 958
consensus_7336#2 TATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGT- 71
consensus_7336#1 TTCCCCTGTTGGACGGCG-ACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTT 170
* * * * ** * * ** * * ** ** * *** **** ***
consensus_7336#0 GACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATC 1018
consensus_7336#2 GACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATC 131
consensus_7336#1 GAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCA--TCGCCGGAT 228
** * * *** ** ** * *** * **** **
consensus_7336#0 CTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGT--TGGCGAGCCA 1076
consensus_7336#2 CTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGT--TGGCGAGCCA 189
consensus_7336#1 CTAGGAG--AGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGA 286
** * ** * * * *** * ** ** *** *** * *
consensus_7336#0 GCCGCCTCCACTACAACATTCGTCCATCAAAGA-----TGGATCCCGCGGTGAAGAGGA- 1130
consensus_7336#2 GCCGCCTCCACTACAACATTCGTCCATCAAAGAC--GATGGATCCCGCGGTGAAGAGGA- 246
consensus_7336#1 GCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTAC 346
** ** * ** ***** * ** ** **** * * * * ** *
consensus_7336#0 GGATATGCTGATCTGA-ATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAA 1189
consensus_7336#2 GGATCTGCTGATCTGA-ATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAA 305
consensus_7336#1 GGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCA 406
**** ** * ** ** ** ** * * * ** * * *** *
consensus_7336#0 CTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTG--------TATAGTGTGTCT 1241
consensus_7336#2 CTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTG--------TATAGTGTGTCC 357
consensus_7336#1 GTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCC 466
* ** *** * * ** * * * ** ** ***
consensus_7336#0 GAATGTAACAGAACCCGTGTGTAAAAGAAAATATTGTCAATAGAGGCTACAATGTTAACT 1301
consensus_7336#2 A---GTGGCGAACCCAG-----AACAAAAATTACTG--------GGGTCCAATATATACT 401
consensus_7336#1 G--TGTAGCGGTTGTAGTC--AATTGAAATCTATTTC-----AGGAGCACAATGTAACCC 517
** * * * ** ** * * **** * *
consensus_7336#0 GGTAGCTT----GGTTTTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA---------- 1347
consensus_7336#2 AATTATCT----AATTAT-TAACTAATAAAAA---------------------------- 428
consensus_7336#1 GGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAG 577
* * * * * **
consensus_7336#0 ------------------------------------------------------------
consensus_7336#2 ------------------------------------------------------------
consensus_7336#1 CGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGC 637
consensus_7336#0 ---------------------------------------------
consensus_7336#2 ---------------------------------------------
consensus_7336#1 ACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT 682
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||