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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1858 fasta sequence
[CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAGCTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAGTTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCAGACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAGTGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAATCCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCACAAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAATTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAAGAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAAACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGCGGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAAGGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTGAAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACTCCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTCTATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATAGAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGGTATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTCAGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTGTTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC--TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA]
[+] EMBL AK071357 [CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAGCTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAGTTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCAGACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAGTGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAATCCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCACAAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAATTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAAGAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAAACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGCGGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAAGGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTGAAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACTCCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTCTATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATAGAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGGTATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTCAGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTGTTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCGAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGCTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTCTTTTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACACGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCACCAGATATTAT ]
[-] EMBL CB632177 [ GAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTAGGTTCTTCTAAAAGTCCATCAGATATTATTAATT ]
[-] EMBL CB631965 [ GATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGTTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA]
consensusID : consensus_7337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence
[AGCACGTGTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGGCAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGCCGGCCAGCCAGCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATGTCTATGCCGATGAGACCAGAACGGGCCACTGAACGTTGATGCACAACACGATCATCCCTGGTTGAACTGGTAAATCAT]
[+] EMBL CB632176 [AGCACGTGTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGGCAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGCCGGCCAGCCAGCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATGTCTATGCCGATGAGACCAGAACGGGCCACTGAACGTTGATGCACAACACGATCATCCCTGGTTGAACTGGTAAATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7337#0 CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAG 60
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 CTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAG 120
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCA 180
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAG 240
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAAT 300
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 CCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCAC 360
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 AAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAA 420
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAA 480
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAA 540
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 ACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGC 600
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAA 660
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTG 720
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 AAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACT 780
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 CCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTC 840
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATA 900
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGG 960
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTC 1020
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 AGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTG 1080
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGAT 1140
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCA 1200
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAA 1260
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 CCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGA 1320
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 GGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGT 1380
consensus_7337#1 -----AGCACGT-GTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGG 54
* * * * ** ** * ** * * * * * ** * * *
consensus_7337#0 GTCATTCAGTCAATTGTTGTCATTGCCGC-ATTGAATGTCCCTCTATACATGATGTTTCT 1439
consensus_7337#1 CAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGC---CGGCCAGCCA 111
** * * * * * ***** * * ** * *
consensus_7337#0 GTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAA 1499
consensus_7337#1 GCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATG 171
* * *** ** ** * *** * * * ** * ** * **
consensus_7337#0 GGGATAC-AACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCT 1558
consensus_7337#1 TCTATGCCGATGAGACCAGAACGGGCCACTG-AACGTTGA-TGCACAACACGATCAT-CC 228
** * * * * ** ** ** * ** ** ** ** * ** *** * *
consensus_7337#0 TTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAAC 1618
consensus_7337#1 CTGGTTGA-ACTGGTAAATCAT-------------------------------------- 249
******* ** * **** **
consensus_7337#0 GTTCAGTGGCCCGTTCTTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCAT 1678
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 ACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGT 1738
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 ATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATAT 1798
consensus_7337#1 ------------------------------------------------------------
consensus_7337#0 TCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA 1858
consensus_7337#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||