These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1646 fasta sequence [GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATATACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACAAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTACTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATTTGTACTTATATTATTGAGAAGTGCCA] [+] EMBL AK111720 [GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATATACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGGGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACAAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTACTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATTTGTACTTATATTATTGAGAAGTGCCA] [+] EMBL AK111933 [ ATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATGTGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCT ] [+] EMBL CB619057 [ TCCCTTTTCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCGGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGTGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCG ] consensusID : consensus_7341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [GCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATTTGTACTTATATTATTGAGAAGTGCCAA] [-] EMBL CB619058 [GCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATTTGTACTTATATTATTGAGAAGTGCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7341#0 GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATAT 60 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 ACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATC 120 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 CACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGC 180 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 CGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGC 240 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 TCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCG 300 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 GATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACC 360 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 TGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTAC 420 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 TCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCA 480 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 AGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACA 540 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 CCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGT 600 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 CGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCG 660 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 GCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAG 720 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 ACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGC 780 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 CAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCG 840 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 TGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCA 900 consensus_7341#1 ------------------------------------------------------------ consensus_7341#0 TCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCA 960 consensus_7341#1 ----------------------------------------------GCCATGTACCGCCA 14 ************** consensus_7341#0 GCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGT 1020 consensus_7341#1 GCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGT 74 ************************************************************ consensus_7341#0 GGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGG 1080 consensus_7341#1 GGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGG 134 ************************************************************ consensus_7341#0 GCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCG 1140 consensus_7341#1 GCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCG 194 ************************************************************ consensus_7341#0 CCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCA 1200 consensus_7341#1 CCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCA 254 ************************************************************ consensus_7341#0 CGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGAC 1260 consensus_7341#1 CGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGAC 314 ************************************************************ consensus_7341#0 AAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCG 1320 consensus_7341#1 GAGATAGATCG--------------GCCACTGCACTATCATCTACAGCAAATACGAATCG 360 ********** *********************************** consensus_7341#0 ATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGT 1380 consensus_7341#1 ATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGT 420 ********** ************************************************* consensus_7341#0 GTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCC 1440 consensus_7341#1 GTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCC 480 ************************************************************ consensus_7341#0 GTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTA 1500 consensus_7341#1 GTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTG 540 *********************************************************** consensus_7341#0 CTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCA 1560 consensus_7341#1 CTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCA 600 ************************************************************ consensus_7341#0 CTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATT 1620 consensus_7341#1 CTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATT 660 ******************************************************* **** consensus_7341#0 TGTACTTATATTATTGAGAAGTGCCA- 1646 consensus_7341#1 TGTACTTATATTATTGAGAAGTGCCAA 687 ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||