These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1744 fasta sequence [CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAGAACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATACAAGT] [+] EMBL AK069558 [CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAGAACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATACAAGT] [+] EMBL CB658631 [ ACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTNCAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCA ] consensusID : consensus_7347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence [AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCATGTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGGAA] [-] EMBL CB658632 [AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCATGTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGG ] [-] EMBL CB658641 [ AGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTCCTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTTTTGAGGGGCAGTATCATTTCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTTTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAAAAAA AAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7347#0 CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTT 60 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGC 120 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATC 180 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 TTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGAT 240 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 TCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGA 300 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 ATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGT 360 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 AACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGAC 420 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCT 480 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 ACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAG 540 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCT 600 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAAT 660 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 TTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAAT 720 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTC 780 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 CGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGT 840 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 GCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTC 900 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 AAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTG 960 consensus_7347#1 -AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTG 59 *********************************************************** consensus_7347#0 GCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTAT 1020 consensus_7347#1 GCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTAT 119 ************************************************************ consensus_7347#0 GGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTAT 1080 consensus_7347#1 GGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTAT 179 ************************************************************ consensus_7347#0 GGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGC 1140 consensus_7347#1 GGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGC 239 ******************************* **************************** consensus_7347#0 CCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAG 1200 consensus_7347#1 CCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAG 299 ************************************************************ consensus_7347#0 CTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAA 1260 consensus_7347#1 CTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAA 359 ************************************************************ consensus_7347#0 GCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAG 1320 consensus_7347#1 GCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAG 419 **** ******************************************************* consensus_7347#0 GAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGG 1380 consensus_7347#1 GAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGG 479 ************************************************************ consensus_7347#0 AACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACG 1440 consensus_7347#1 AACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACG 539 ************************************************************ consensus_7347#0 AGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGG 1500 consensus_7347#1 AGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGG 599 ************************************************************ consensus_7347#0 TGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATC 1560 consensus_7347#1 TGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATC 659 ***************************************************** ****** consensus_7347#0 ATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCAT 1620 consensus_7347#1 ATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCAT 719 ****************************** ***************************** consensus_7347#0 ATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAG 1680 consensus_7347#1 GTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGGAA--------------- 764 ***************************** * * * * consensus_7347#0 AACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATAC 1740 consensus_7347#1 ------------------------------------------------------------ consensus_7347#0 AAGT 1744 consensus_7347#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||