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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 959 fasta sequence
[TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTAATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATATATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATCTAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAGTCAAGGAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAAACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAACCTCCCCAACTGTAGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCATTTCT]
[+] EMBL CF309978 [TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTAATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATATATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATCTAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAGTCAAGGAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAAACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAACCTCCCCAACTGTAGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCAC ]
[-] EMBL CF309977 [ AGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCATTTCT]
consensusID : consensus_7352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[CACCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAACNCTTTTGAACCAATGTTTTCATGTGAATCTTTCTATGGTATATGCAATAGCACTAATGATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNCCCTTGTTGCTCAAAGAAGAANCCTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCACTTCTC]
[-] EMBL CA765213 [CACCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAACNCTTTTGAACCAATGTTTTCATGTGAATCTTTCTATGGTATATGCAATAGCACTAATGATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNCCCTTGTTGCTCAAAGAAGAANCCTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCACTTCTC]
consensusID : consensus_7352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA]
[-] EMBL OSA420721 [TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7352#0 TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTA 60
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATA 120
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATC 180
consensus_7352#1 ----------------------------------------------------------CA 2
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAG 240
consensus_7352#1 CCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAAC 62
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TCAAG-GAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAA 299
consensus_7352#1 NCTTTTGAACCAATGTTTTCATGT---GAATCTTTCTATGGTATATGCAATAGCACTAAT 119
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAAC 359
consensus_7352#1 GATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNC-CCTTGTTGCTCAAAGAAGAANC 178
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 CTCCCC--AACTGTAGATCAGCTGACTTGGGCAGAA-GATAAGCACTCGCATCATTCAGA 416
consensus_7352#1 CTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGA 238
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 GAAACAGTCTCAAGTTTATATCCATCTGTTGGACCT------------CCAAATAGAAGC 464
consensus_7352#1 GAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGC 298
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 CACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGG 524
consensus_7352#1 CACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGG 358
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 584
consensus_7352#1 ATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 418
consensus_7352#2 -TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 59
***********************************************************
consensus_7352#0 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 644
consensus_7352#1 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 478
consensus_7352#2 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 119
************************************************************
consensus_7352#0 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATG 704
consensus_7352#1 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATG 538
consensus_7352#2 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATG 179
***************************************** ******************
consensus_7352#0 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 764
consensus_7352#1 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 598
consensus_7352#2 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 239
************************************************************
consensus_7352#0 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 824
consensus_7352#1 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 658
consensus_7352#2 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 299
************************************************************
consensus_7352#0 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGG 884
consensus_7352#1 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGG 718
consensus_7352#2 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGG 359
**************************************************** *******
consensus_7352#0 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGA 944
consensus_7352#1 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGA 778
consensus_7352#2 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGAT-GGATGCTGTTACT 418
************************************** ** * ** * * *
consensus_7352#0 TTCTTTTTCATTTCT--------------------------------------------- 959
consensus_7352#1 TTCTTTTTCACTTCTC-------------------------------------------- 794
consensus_7352#2 TACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGA 478
* * ** * * *
consensus_7352#0 -----------------------------------
consensus_7352#1 -----------------------------------
consensus_7352#2 ACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA 513
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||