These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 959 fasta sequence [TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTAATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATATATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATCTAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAGTCAAGGAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAAACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAACCTCCCCAACTGTAGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCATTTCT] [+] EMBL CF309978 [TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTAATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATATATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATCTAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAGTCAAGGAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAAACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAACCTCCCCAACTGTAGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCAC ] [-] EMBL CF309977 [ AGATCAGCTGACTTGGGCAGAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCATTTCT] consensusID : consensus_7352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [CACCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAACNCTTTTGAACCAATGTTTTCATGTGAATCTTTCTATGGTATATGCAATAGCACTAATGATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNCCCTTGTTGCTCAAAGAAGAANCCTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCACTTCTC] [-] EMBL CA765213 [CACCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAACNCTTTTGAACCAATGTTTTCATGTGAATCTTTCTATGGTATATGCAATAGCACTAATGATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNCCCTTGTTGCTCAAAGAAGAANCCTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGAGAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGCCACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGGATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGATTCTTTTTCACTTCTC] consensusID : consensus_7352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA] [-] EMBL OSA420721 [TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGATTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGGCGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATGATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGGAGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGTGTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGGGAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7352#0 TTTTTTAAATACAATTTTTTTTTATTTGGAAGTAATCGCTATATTTTTTTGGAAAGAGTA 60 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ATATGGTGTCATATAATAAGTACTAGAAAGAAACAGCCACTCCGCTGCGTGCGCGGAATA 120 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TATAGTTAATGGCACATAATAAATACAAATGTCCGGTATGTAAACATCGATATGGTAATC 180 consensus_7352#1 ----------------------------------------------------------CA 2 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TAACACTACGTGGGGAAATAATTTACATCGAGGATGCTAGGATCCATCTCTTTCGGGGAG 240 consensus_7352#1 CCAAACTNCAAAAGTGCAGANTCAATNCCAGGATCCCCGAAAANTATGACCACCCGAAAC 62 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TCAAG-GAGCGCTCTTCCTCATTTTTAGAGAAGTCCACAAAAACATGGACTTTCAGAGAA 299 consensus_7352#1 NCTTTTGAACCAATGTTTTCATGT---GAATCTTTCTATGGTATATGCAATAGCACTAAT 119 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ACATTCAACATTTCCGCATAGCTATGCTCTTCATGACACCTTGTTGCTCAAAGAAGAAAC 359 consensus_7352#1 GATTTTAAAGGATGAAAAAGAAGGTAATGATCCCCNC-CCTTGTTGCTCAAAGAAGAANC 178 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 CTCCCC--AACTGTAGATCAGCTGACTTGGGCAGAA-GATAAGCACTCGCATCATTCAGA 416 consensus_7352#1 CTCCCCCCAACTGTAGATCAGCTGACTTGGGCAGAAAGATAAGCACTCGCATCATTCAGA 238 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 GAAACAGTCTCAAGTTTATATCCATCTGTTGGACCT------------CCAAATAGAAGC 464 consensus_7352#1 GAAACAGTCTCAAGTTTATATCCATCTGTTGGACCTGCAAGAAAAACTCCAAATAGAAGC 298 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 CACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGAATTAGGGG 524 consensus_7352#1 CACAGTAGTTGGCACATGAGCTGATGCCATTGCTTTTCTGTGTGTGATTCGGATTAGGGG 358 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 584 consensus_7352#1 ATCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 418 consensus_7352#2 -TCATTCCATGGATTCACCACAGGTTCAAGATCACGCTGCAGAGTGAGCACCAGTGCGGA 59 *********************************************************** consensus_7352#0 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 644 consensus_7352#1 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 478 consensus_7352#2 TTGGATCGATCGTATCTGACCAAGGCAGCGGACCGGTGCCCTACGATGACATGGTGGAGG 119 ************************************************************ consensus_7352#0 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATG 704 consensus_7352#1 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGGCCCAAATCGATGTGGATG 538 consensus_7352#2 CGGACATGCCCTTGAAGGCTAGACCTTGGAGTGGCCCAAAGACCCAAATCGATGTGGATG 179 ***************************************** ****************** consensus_7352#0 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 764 consensus_7352#1 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 598 consensus_7352#2 ATGGGGCAAGAGCATGCCGTAGAGGACGCGGTCGCGTTGCCAGCGCCGATGGCCGGTCGG 239 ************************************************************ consensus_7352#0 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 824 consensus_7352#1 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 658 consensus_7352#2 AGTGGTGGCAACCGGATCCACTAGTGGGGAGGCCGAGAGCATCTACTGGGATGGCTCTGT 299 ************************************************************ consensus_7352#0 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTAGCATGGG 884 consensus_7352#1 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGG 718 consensus_7352#2 GTCACCAATCCGTGGCGGCAAAGCTCACCGGAGTTGAGGGACACGATGAACTGGCATGGG 359 **************************************************** ******* consensus_7352#0 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGA 944 consensus_7352#1 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGACATAACTTGGGGGAGGAGAGA 778 consensus_7352#2 GAAGAAGAAGAAGAAGAAGACTTAGGCGAGAAGAAGAGCGATGGAT-GGATGCTGTTACT 418 ************************************** ** * ** * * * consensus_7352#0 TTCTTTTTCATTTCT--------------------------------------------- 959 consensus_7352#1 TTCTTTTTCACTTCTC-------------------------------------------- 794 consensus_7352#2 TACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGA 478 * * ** * * * consensus_7352#0 ----------------------------------- consensus_7352#1 ----------------------------------- consensus_7352#2 ACACTGATTGTCTCGTGTTAAAAAAAAAAAAAAAA 513 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||