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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1135 fasta sequence
[CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCT-GCAAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATT-GTACTATACCGACAATGTGCTGAGAAAA-GGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCCAACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTTTTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAGCCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCTCCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC]
[+] EMBL AK111083 [CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCT GCAAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATT GTACTATACCGACAATGTGCTGAGAAAA GGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTT ]
[+] EMBL C91798 [ CCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCT TCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCTGGCAAATCAATGATATTGAGCCGTTTTGNCAAGATGAAATTGGTACTATACCGACAATGTGCTGAGAAAANGGGACAAGGGAATAAGAna ]
[+] EMBL CA766502 [ tAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACGAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCCAACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTTTTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAGCCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCTCCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC]
consensusID : consensus_7354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence
[ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172856 [ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7354#0 CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCG 60
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 CCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCG 120
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 GTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGA 180
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 AGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTG 240
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 TTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCAC 300
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 ATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCTGC 360
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 AAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATTGTACTATACCGACAATGTGCTG 420
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 AGAAAAGGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTT 480
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 CAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGC 540
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 TTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGAT 600
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 GGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAA 660
consensus_7354#1 -------ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAA 53
****** ************ *********************************
consensus_7354#0 TCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGA 720
consensus_7354#1 TCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAA 113
********* ************** ********** **************** ** ** *
consensus_7354#0 GGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGG 780
consensus_7354#1 GGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGG 173
******************************** ***************************
consensus_7354#0 TATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAA 840
consensus_7354#1 TATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAA 233
************************************* ** * *** **
consensus_7354#0 CAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCC 900
consensus_7354#1 AAAA-------------------------------------------------------- 237
**
consensus_7354#0 AACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTT 960
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 TTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAG 1020
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 CCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCT 1080
consensus_7354#1 ------------------------------------------------------------
consensus_7354#0 CCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC 1135
consensus_7354#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||