These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1135 fasta sequence [CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCT-GCAAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATT-GTACTATACCGACAATGTGCTGAGAAAA-GGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCCAACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTTTTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAGCCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCTCCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC] [+] EMBL AK111083 [CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCT GCAAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATT GTACTATACCGACAATGTGCTGAGAAAA GGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTT ] [+] EMBL C91798 [ CCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCGCCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCGGTTGGTTGGTGTATCT TCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGAAGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTGTTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCACATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCTGGCAAATCAATGATATTGAGCCGTTTTGNCAAGATGAAATTGGTACTATACCGACAATGTGCTGAGAAAANGGGACAAGGGAATAAGAna ] [+] EMBL CA766502 [ tAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTTCAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGCTTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGACACGAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCCAACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTTTTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAGCCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCTCCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC] consensusID : consensus_7354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172856 [ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGGTATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7354#0 CTCCTCCTCCGGTCTCCTTCCTCCCCTTCACCTCCGCGGCGCGCCGTCGGTCGCCGCTCG 60 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 CCGCCGCCTTCTGGTTCTTCTCCGGTCTATTTCCCCGCGGGATTCGTCGCGGACACTCCG 120 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 GTTGGTTGGTGTATCTAAGTCGGTTCGAGTTGCCAAAATCTGATTGTTCTCCGGAGGTGA 180 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 AGGTTTACTAGGCAATCATGGATGTCGATAAGCAGGAAACGATGGAAGAGACCATTCTTG 240 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 TTGGTGATGATCTCATGCGTGGGTTGCCATCCCCTGTCATACCAAAGGAAATTGCTTCAC 300 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 ATGTCCTTGACGGTGTTGAGATTTGTGATGGCATACTCAAAAATCTTTTCTTATGTCTGC 360 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 AAATCAATGATATTGAGCCGTTTTGCCAAGATGAAATTGTACTATACCGACAATGTGCTG 420 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 AGAAAAGGGACAAGGAAATAAGAGAGCGGCTGCAGGATAGTGAATATAAGCTGGGTTTTT 480 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 CAATGCCCCTGGAAGAAGCTAAGGAAAGAGCTACCCAACTCCAATCAGAAATCACACTGC 540 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 TTGAAAGGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGAT 600 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 GGAGCTTACATGGACAGCTTGGAGACACAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAA 660 consensus_7354#1 -------ACATGGNCAGCTTGGAGACNCAAGGAAAAGGTTGGAAGCGCTGAACAGTGGAA 53 ****** ************ ********************************* consensus_7354#0 TCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCCTGCAGTCAGGAAGA 720 consensus_7354#1 TCGTAAAAANAGGGAGCCAAAGTTNTCCAGTGCAANAGACAACTCCTGCAGTNAGNAAAA 113 ********* ************** ********** **************** ** ** * consensus_7354#0 GGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGG 780 consensus_7354#1 GGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTNTGATTTGCAAACCAGTGTAGCATATGG 173 ******************************** *************************** consensus_7354#0 TATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAA 840 consensus_7354#1 TATATTATTGGCCATGGGCATGCACTCGTTCCTTTCCCCAAAAAAAAAAAAAAAAAAAAA 233 ************************************* ** * *** ** consensus_7354#0 CAATCGCACCTGCTAACCAGTACAATTTGCATTTATACATAGGCTCCACCCCCAACTTCC 900 consensus_7354#1 AAAA-------------------------------------------------------- 237 ** consensus_7354#0 AACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCCAACTTT 960 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 TTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAG 1020 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 CCATAGCTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCT 1080 consensus_7354#1 ------------------------------------------------------------ consensus_7354#0 CCTAATACACTCATACATTCNTGCCTGTGCCTTGGGAACCTTACCATAGCCCACC 1135 consensus_7354#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||