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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1371 fasta sequence
[CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGTTGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGACAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCCACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCGGCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGAAATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTCTTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCAGCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA]
[+] EMBL AK073359 [CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGTTGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGACAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCCACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCGGCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGAAATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTCTTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCAGCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA]
consensusID : consensus_7360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 935 fasta sequence
[CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCACCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTTCTAATATGTGCTAAAGA-GGGATCATTCTGCTTAAAAAAAA]
[+] EMBL AK073210 [CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCACCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGTCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTA ]
[-] EMBL CB684549 [ TTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTCCAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTATTACCTTATATGCCTCGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGCCATATTACCTTTCTAATATGTGCTAAAGATGGGATCATTCTG ]
[+] EMBL AU163776 [ AAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTTCTACTATGTGCTAAAGA GGGATCATTCTGCTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7360#0 CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCC- 59
consensus_7360#1 -----CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCA 55
******************************************************
consensus_7360#0 --GCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGT 117
consensus_7360#1 CCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGT 115
**********************************************************
consensus_7360#0 CGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACT 177
consensus_7360#1 CGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACT 175
************************************************************
consensus_7360#0 TGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGC 237
consensus_7360#1 TGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGC 235
************************************************************
consensus_7360#0 GAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGA 297
consensus_7360#1 GAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGA 295
************************************************************
consensus_7360#0 GGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCT 357
consensus_7360#1 GGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCT 355
************************************************************
consensus_7360#0 CACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCT 417
consensus_7360#1 CACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCT 415
************************************************************
consensus_7360#0 ATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAG 477
consensus_7360#1 ATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAG 475
************************************************************
consensus_7360#0 GTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACC 537
consensus_7360#1 GTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACC 535
************************************************************
consensus_7360#0 GCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCC 597
consensus_7360#1 GCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCC 595
************************************************************
consensus_7360#0 GCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTT 657
consensus_7360#1 GCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTT 655
************************************************************
consensus_7360#0 CTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGA 717
consensus_7360#1 CTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGA 715
************************************************************
consensus_7360#0 TGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCAT 777
consensus_7360#1 TGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCAT 775
************************************************************
consensus_7360#0 CAACTGATTGACTTCAATTAAGAGGGATCATT----CTGCTTAAGCGACTCAGCCAACTA 833
consensus_7360#1 CAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTA 835
********************** * * * **** * ****** **
consensus_7360#0 CCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTC--CTCGAGCGTGTTGCCTGC 891
consensus_7360#1 TTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTT 895
** * ** ** ** * ** * ** * * ** ***
consensus_7360#0 TTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGT 951
consensus_7360#1 CTAATATG----TGC---TAAAGAGGGATCATTC--TGCTTAAAAAAAA----------- 935
* ** ** *** *** * *** * * ** ** *
consensus_7360#0 TGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGA 1011
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 CAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCC 1071
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 ACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCG 1131
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 GCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGA 1191
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 AATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTC 1251
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 TTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCA 1311
consensus_7360#1 ------------------------------------------------------------
consensus_7360#0 GCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA 1371
consensus_7360#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||