These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1371 fasta sequence [CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGTTGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGACAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCCACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCGGCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGAAATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTCTTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCAGCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA] [+] EMBL AK073359 [CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGTTGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGACAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCCACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCGGCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGAAATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTCTTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCAGCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA] consensusID : consensus_7360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 935 fasta sequence [CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCACCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTTCTAATATGTGCTAAAGA-GGGATCATTCTGCTTAAAAAAAA] [+] EMBL AK073210 [CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCACCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGTCGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGTCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTA ] [-] EMBL CB684549 [ TTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTCCAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTATTACCTTATATGCCTCGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGCCATATTACCTTTCTAATATGTGCTAAAGATGGGATCATTCTG ] [+] EMBL AU163776 [ AAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTTCTACTATGTGCTAAAGA GGGATCATTCTGCTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7360#0 CTCCTCCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCC- 59 consensus_7360#1 -----CCCCCTCGTATCGCTCGGGAGCGGAGGTCTCCTCGCCCCTAGAGCGCCGCCGCCA 55 ****************************************************** consensus_7360#0 --GCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGT 117 consensus_7360#1 CCGCCACCGCCGCGGCCGCCGCGGCGGGGACTTGCCGGTGCCAAGTCCACACGCCATCGT 115 ********************************************************** consensus_7360#0 CGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACT 177 consensus_7360#1 CGCTCGCACCCTTCCCGCGCAGGGATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACT 175 ************************************************************ consensus_7360#0 TGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGC 237 consensus_7360#1 TGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGC 235 ************************************************************ consensus_7360#0 GAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGA 297 consensus_7360#1 GAAGTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGA 295 ************************************************************ consensus_7360#0 GGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCT 357 consensus_7360#1 GGGATGCTGAGGATGCACTCCGTGATTTAGATGGCAAGAATGGATGGAGAGTTGAGCTCT 355 ************************************************************ consensus_7360#0 CACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCT 417 consensus_7360#1 CACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCT 415 ************************************************************ consensus_7360#0 ATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAG 477 consensus_7360#1 ATGAGTGTGGTGAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAG 475 ************************************************************ consensus_7360#0 GTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACC 537 consensus_7360#1 GTCTGGGTAGTGGAAAGCGTCGTAGCAGGAGTCGCAGCCGCAGTCGCAGCCCTCAATACC 535 ************************************************************ consensus_7360#0 GCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCC 597 consensus_7360#1 GCAAGAGCCCGACCTATGGTAGAAGAAGCTACAGTCCTCGTGATCGCTCTCCAAGGCGCC 595 ************************************************************ consensus_7360#0 GCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTT 657 consensus_7360#1 GCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTT 655 ************************************************************ consensus_7360#0 CTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGA 717 consensus_7360#1 CTCCTTATGCTGATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGA 715 ************************************************************ consensus_7360#0 TGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCAT 777 consensus_7360#1 TGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTGGCAT 775 ************************************************************ consensus_7360#0 CAACTGATTGACTTCAATTAAGAGGGATCATT----CTGCTTAAGCGACTCAGCCAACTA 833 consensus_7360#1 CAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTCAGCCTCTTA 835 ********************** * * * **** * ****** ** consensus_7360#0 CCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTC--CTCGAGCGTGTTGCCTGC 891 consensus_7360#1 TTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTT 895 ** * ** ** ** * ** * ** * * ** *** consensus_7360#0 TTCATGTGAAGTTGCAAGCAAAAGAGAATCTTCCATTGTTTCCTGCCTATGATGCCTCGT 951 consensus_7360#1 CTAATATG----TGC---TAAAGAGGGATCATTC--TGCTTAAAAAAAA----------- 935 * ** ** *** *** * *** * * ** ** * consensus_7360#0 TGTGGTTGGCACTCTTCGTTGAAGATGCTGCATCGTCACAAATTACCTGTAATTCAGCGA 1011 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 CAAAAGGAATTTGCTGGGTTGGCTTCCGCAAGAGGCAGAGACTACCTTTTAAGCGGTTCC 1071 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 ACCGACTCCACCCCTTGGCTTTATTCTTTCTGGTTTTTCCTTCACTCTGCGCATCTGTCG 1131 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 GCCTTCTTCCTGCACTGCATCGCCATAATAGTAGCCTCTATATATGGGACCTTCAGATGA 1191 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 AATATTCTCGTTCTGCATTCTTCCTACCGGCGGCCATTAGACAAAATATGTTTTTTTTTC 1251 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 TTTCTGTTTATGTGGTTTATTACTTTTATTTGTATCTCAACCGTTCAGAACAAGTGGCCA 1311 consensus_7360#1 ------------------------------------------------------------ consensus_7360#0 GCACTTCATGTCTCAATTGTTGTGAATTACTCTTTTGACCTAGAGCTAATAACAGCCTCA 1371 consensus_7360#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||