These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence [CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCATGCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATATAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGGAAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTATTGCAGCTGTGACGGG] [+] EMBL CB632213 [CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCATGCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATATAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGGAAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATT ] [-] EMBL AU174225 [ TTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTATTGCAGCTGTGACGGG] [-] EMBL AU222905 [ TTTTTCACATGAACAGGANATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGNAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGNGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTA ] consensusID : consensus_7364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TTTTTTTTTTTTTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGGAAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGGTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGGGGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGCTTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCTGTGTCACCGAATGAAGGCGGCGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCGGCCGGCGGGGGCGCCCGCGTGACGGCGCGCCCGGGGCGGGGCGGATGTACGAAGGCCGGGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTGCCC] [+] EMBL CA760691 [TTTTTTTTTTTTTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGGAAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGGTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGGGGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGCTTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCTGTGTCACCGAATGAAGGCGGCGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCGGCCGGCGGGGGCGCCCGCGTGACGGCGCGCCCGGGGCGGGGCGGATGTACGAAGGCCGGGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7364#0 CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCAT 60 consensus_7364#1 ------------------------------------------------------------ consensus_7364#0 GCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATA 120 consensus_7364#1 ------------------------------------------------------------ consensus_7364#0 TAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATA 180 consensus_7364#1 ------------------------------------------------------------ consensus_7364#0 TGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGA 240 consensus_7364#1 ------------------------------------------------------------ consensus_7364#0 ATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCC 300 consensus_7364#1 ------------------------------TTTTTTTTTTTTTTGACATTGAAGATAGCC 30 * * ****************** consensus_7364#0 TCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTA 360 consensus_7364#1 TCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTA 90 ***************************** **************** ****** ****** consensus_7364#0 CTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGG 420 consensus_7364#1 CTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGG 150 *********************************** *********************** consensus_7364#0 AAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACAT 480 consensus_7364#1 AAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACAT 210 ******* **************************************************** consensus_7364#0 GAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGT 540 consensus_7364#1 GAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGG 270 ***************************************** ***************** consensus_7364#0 TCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGT 600 consensus_7364#1 TCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGG 330 ************************************ *** * ***** ****** * * consensus_7364#0 CGTC-ATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAA-AGTGATAGGTTGATC 658 consensus_7364#1 GGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGC 390 * *** ******* ******* *** ** *** * ** * ** **** ** * consensus_7364#0 ATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTG 718 consensus_7364#1 TTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCT-GTGTCACCG 449 * * * ** ** * * * ** * * ***** * * * * * * consensus_7364#0 GTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTG 778 consensus_7364#1 AATGAAGGCGG--CGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCG-G 506 * ** * * * *** * * * * **** * consensus_7364#0 ATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTT 838 consensus_7364#1 CCGGCGGGGGCGCCCGCGTGACGGCGC-GCCCGGGGCGGGGCGGATGTACGAA--GGCCG 563 * * *** * * * * * **** * *** consensus_7364#0 TTCACTGGGTCTCATCTGTAC-CTGTTTGATGCACTCA-GGACCATCAAAAGATATTTTG 896 consensus_7364#1 GGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTG 623 * ** * * * ** * ** * ** ** * * * ** ** consensus_7364#0 CCTATTGCAGCTGTGACGGG 916 consensus_7364#1 CCC----------------- 626 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||