cluster # 7364

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Oryza sativa
cluster # 7364 cluster # 7364 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7364#0 length = 916 sequences # 3

consensus_7364#1 length = 626 sequences # 1

consensusID : consensus_7364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 916
fasta sequence

                              [CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCATGCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATATAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGGAAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTATTGCAGCTGTGACGGG]

[+] EMBL CB632213             [CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCATGCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATATAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGGAAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATT                                                                                                                                                                               ]
[-] EMBL AU174225             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTATTGCAGCTGTGACGGG]
[-] EMBL AU222905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTTTCACATGAACAGGANATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGTTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGNAAATATAAGGTCGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGNGCTGGTACGTTTTATCCAATTGGTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTTCACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTA                ]




>consensus_7364#0
CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCAT
GCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATA
TAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATA
TGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGA
ATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCC
TCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTA
CTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGG
AAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACAT
GAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGT
TCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGT
CGTCATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAAAGTGATAGGTTGATCAT
TAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTGGT
TTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTGAT
CCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTTTT
CACTGGGTCTCATCTGTACCTGTTTGATGCACTCAGGACCATCAAAAGATATTTTGCCTA
TTGCAGCTGTGACGGG

consensusID : consensus_7364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [TTTTTTTTTTTTTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGGAAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGGTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGGGGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGCTTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCTGTGTCACCGAATGAAGGCGGCGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCGGCCGGCGGGGGCGCCCGCGTGACGGCGCGCCCGGGGCGGGGCGGATGTACGAAGGCCGGGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTGCCC]

[+] EMBL CA760691             [TTTTTTTTTTTTTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTACTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGGAAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGGTCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGGGGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGCTTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCTGTGTCACCGAATGAAGGCGGCGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCGGCCGGCGGGGGCGCCCGCGTGACGGCGCGCCCGGGGCGGGGCGGATGTACGAAGGCCGGGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTGCCC]




>consensus_7364#1
TTTTTTTTTTTTTTGACATTGAAGATAGCCTCTAATTTACCTCAAAAAAGAGAGAAAAAG
AAGGTAGTAGCTGCTAGATAAGGGGATGTACTTCCGAGGGACAGAGTCAGCACTAACATT
ACTTGTTAAACTACTTCTTTGCAAAATAGGAAAGCAGCGATGCTTGTCCAACCGAAGCAG
GTTTCGGGCCTTTTACCTTCTTTTTCACATGAACAGGAGATCTGCCACTCTTCTCCATCA
CTTTATCCGCAGGAACTTCATCATCCTCGGTCTTCCTCTTCAATCTTAAAGCATCTTGTT
TCTGTGGTGCGTTGTCAGGAAATATTAAGGGGCGGATTGTTCATGGGTTTAGCCCTCTGG
AGGTCAGGGTCGAGCGGTCGGAGGTGGAGCTTCTTCTCTCGACGCGTGCGGGGCTCCTCC
GGTCCTGGGCTGGCGCATCTGTGTCACCGAATGAAGGCGGCGAGAGCGCGGCGAACTTGG
GAGGTGGGCGCCGTGCCCGATTGCGGCCGGCGGGGGCGCCCGCGTGACGGCGCGCCCGGG
GCGGGGCGGATGTACGAAGGCCGGGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTG
GCGGGGCAGCGCATGTGATCGTGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7364#0      CATTTTTATCCCATTGTCACGCACATGCATCTTTTCTATTTAATATTAAATATGACCCAT 60
consensus_7364#1      ------------------------------------------------------------
                                                                                  

consensus_7364#0      GCAACGCTCAGGTTGACAGCCAGAGGCAGTACCTGCTTACTTCCTCCGTTTCACAATATA 120
consensus_7364#1      ------------------------------------------------------------
                                                                                  

consensus_7364#0      TAAGTCATTCTACTATTTTTCACATTCATATTGATGTTAATGAATCTAAATAGATATATA 180
consensus_7364#1      ------------------------------------------------------------
                                                                                  

consensus_7364#0      TGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGA 240
consensus_7364#1      ------------------------------------------------------------
                                                                                  

consensus_7364#0      ATCGAAGGGAATACATCATTAGCAAAATATTAGACACACTACTTGACATTGAAGATAGCC 300
consensus_7364#1      ------------------------------TTTTTTTTTTTTTTGACATTGAAGATAGCC 30
                                                    *        *  ******************

consensus_7364#0      TCTAATTTACCTCAAAAAAGAGAGAAAAATAAGGTAGTAGCTGCTAAATAAGGTGATGTA 360
consensus_7364#1      TCTAATTTACCTCAAAAAAGAGAGAAAAAGAAGGTAGTAGCTGCTAGATAAGGGGATGTA 90
                      ***************************** **************** ****** ******

consensus_7364#0      CTTCCGAGGGACAGAGTCAGCACTAACATTACTTGAGAAACTACTTCTTTGCAAAATAGG 420
consensus_7364#1      CTTCCGAGGGACAGAGTCAGCACTAACATTACTTGTTAAACTACTTCTTTGCAAAATAGG 150
                      ***********************************  ***********************

consensus_7364#0      AAAGCAGTGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACAT 480
consensus_7364#1      AAAGCAGCGATGCTTGTCCAACCGAAGCAGGTTTCGGGCCTTTTACCTTCTTTTTCACAT 210
                      ******* ****************************************************

consensus_7364#0      GAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCATGAACTTCATCATCCTCGT 540
consensus_7364#1      GAACAGGAGATCTGCCACTCTTCTCCATCACTTTATCCGCAGGAACTTCATCATCCTCGG 270
                      ***************************************** ***************** 

consensus_7364#0      TCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGTTGCTTCGTCAGTAAATATAAGGT 600
consensus_7364#1      TCTTCCTCTTCAATCTTAAAGCATCTTGTTTCTGTGGTGCGTTGTCAGGAAATATTAAGG 330
                      ************************************ *** * ***** ****** * * 

consensus_7364#0      CGTC-ATTCTTCATGGTTTTAGCCTTCTCGACATCATGTTCCAA-AGTGATAGGTTGATC 658
consensus_7364#1      GGCGGATTGTTCATGGGTTTAGCCCTCTGGAGGTCAGGGTCGAGCGGTCGGAGGTGGAGC 390
                       *   *** ******* ******* *** **  *** * ** *   **   **** ** *

consensus_7364#0      ATTAAATATAGAAGCATCTTGCTCCTCTTCCACTTGGTGCTGGTACGTTTTATCCAATTG 718
consensus_7364#1      TTCTTCTCTCGACGCGTGCGGGGCTCCTCCGGTCCTGGGCTGGCGCATCT-GTGTCACCG 449
                       *    * * ** ** *   *  *  ** *      * *****  * * *  *   *  *

consensus_7364#0      GTTTTCTGCTGATTCATGCCATTCTTTGTTTGCAGCTCGAAAGGCTTTTGTTTCTGCGTG 778
consensus_7364#1      AATGAAGGCGG--CGAGAGCGCGGCGAACTTGGGAGGTGGGCGCCGTGCCCGATTGCG-G 506
                        *    ** *    *   *         ***      *   * * *       **** *

consensus_7364#0      ATCCTGATCTTTCTTCTCTGATTTCACTGGTTTCTTCATGAANAATGTCGAGATTGGCTT 838
consensus_7364#1      CCGGCGGGGGCGCCCGCGTGACGGCGC-GCCCGGGGCGGGGCGGATGTACGAA--GGCCG 563
                           *      *     ***   * * *       *  *    ****    *  ***  

consensus_7364#0      TTCACTGGGTCTCATCTGTAC-CTGTTTGATGCACTCA-GGACCATCAAAAGATATTTTG 896
consensus_7364#1      GGCGAGGGCGCGCGCGCGCGGGTTGCCGTAAGCTTTGGCGGGGCAGCGCATGTGATCGTG 623
                        *   **  * *    *     **    * **  *   **  ** *  * *  **  **

consensus_7364#0      CCTATTGCAGCTGTGACGGG 916
consensus_7364#1      CCC----------------- 626
                      **