cluster # 7369

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Oryza sativa
cluster # 7369 cluster # 7369 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7369#0 length = 810 sequences # 2

consensus_7369#1 length = 539 sequences # 1
consensus_7369#2 length = 260 sequences # 1

consensusID : consensus_7369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCATCAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAATTGGCTGTTGCCGGTTCGATACCCTCTCATC]

[+] EMBL CB632288             [CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCATCAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAATTGGCTGTTGCCGGTTCGATACCCTCTCATC]
[+] EMBL CB632286             [cgctTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTG GAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCT                                                                                                                           ]




>consensus_7369#0
CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGG
TAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAG
ATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCT
TTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCAT
CAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCT
GCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGG
TCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCT
CCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCT
CGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAA
TCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGG
CAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCA
CTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCAT
CAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAAT
TGGCTGTTGCCGGTTCGATACCCTCTCATC

consensusID : consensus_7369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [GCGGAATGTACAAGTCAANAATCATAAAACTACGAGCATACCTTGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGTACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCTCGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAATCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCACTGCGTCCGTTAGTTG]

[-] EMBL CB640228             [GCGGAATGTACAAGTCAANAATCATAAAACTACGAGCATACCTTGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGTACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCTCGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAATCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCACTGCGTCCGTTAGTTG]




>consensus_7369#1
GCGGAATGTACAAGTCAANAATCATAAAACTACGAGCATACCTTGATTGATAAGTTCTTG
AAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGGCAAGTGGTT
TCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAA
CTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGTACGGCTGGGGATTCTGG
GACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCTCCTCTTGCATGCTGAGC
TCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCTCGATATCTCTCTTACTC
CTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAATCTTCCAGGGAATCACG
CCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGGCGAGTGACAGCTCGTCC
TTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCACTGCGTCCGTTAGTTG

consensusID : consensus_7369#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCATCAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCTGCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC]

[+] EMBL CB639175             [CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCATCAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCTGCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC]




>consensus_7369#2
CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTC
TCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCTTTATTGATAAGTTCT
TGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCATCAACGGGACAGGTCG
ATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCTGCCCCGTTGAGGCGC
ACTTGCTACGGTTCCCTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7369#0      CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGG 60
consensus_7369#1      ------------------------------------------------------------
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      TAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAG 120
consensus_7369#1      ------------------------------------------------------------
consensus_7369#2      ---------------CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCC 45
                                                                                  

consensus_7369#0      ATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCT 180
consensus_7369#1      ---------------GCGGAATGTACAAGTCAANAATCATAAAACTACGAG--CATACCT 43
consensus_7369#2      TTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCT 105
                                      *    *                         *        ****

consensus_7369#0      TTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCAT 240
consensus_7369#1      TGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCAT 103
consensus_7369#2      TTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCAT 165
                      * ***************** ******************** **** **************

consensus_7369#0      CAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCT 300
consensus_7369#1      CAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCT 163
consensus_7369#2      CAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCT 225
                      ******* ** ** * * *  **** *********** *********** **********

consensus_7369#0      GCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGG 360
consensus_7369#1      GCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGT 223
consensus_7369#2      GCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC------------------------- 260
                      ****************  ******* ** *****                          

consensus_7369#0      TCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCT 420
consensus_7369#1      ACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCT 283
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      CCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCT 480
consensus_7369#1      CCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCT 343
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      CGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAA 540
consensus_7369#1      CGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAA 403
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      TCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGG 600
consensus_7369#1      TCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGG 463
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      CAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCA 660
consensus_7369#1      CGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCA 523
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      CTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCAT 720
consensus_7369#1      CTGCGTCCGTTAGTTG-------------------------------------------- 539
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      CAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAAT 780
consensus_7369#1      ------------------------------------------------------------
consensus_7369#2      ------------------------------------------------------------
                                                                                  

consensus_7369#0      TGGCTGTTGCCGGTTCGATACCCTCTCATC 810
consensus_7369#1      ------------------------------
consensus_7369#2      ------------------------------