These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1052 fasta sequence [TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCGCCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGAAGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCTTCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGAAAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGCTATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATTATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAAAAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA] [+] EMBL BU673633 [TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCGCCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGAAGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCTTCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGAAAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGCTATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATTATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAAAAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATNAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGGTCT CCCCAGCAGAGTTCCACACCTTGAGAGC ] [+] EMBL AK060401 [ ACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTG ] [+] EMBL AU070811 [ TGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA] consensusID : consensus_7372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [GGACGAGACAAGGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAATCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCGAAGAGAAGCAGGAGCAGGAGGACTGGGATGGAAATGGTGAATTGGAGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTGTCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTGTAAGACTACCCCTTTTTTTCTATAGAAAGGACCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA] [+] EMBL CA765076 [GGACGAGACAAGGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAATCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCGAAGAGAAGCAGGAGCAGGAGGACTGGGATGGAAATGGTGAATTGGAGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTGTCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTGTAAGACTACCCCTTTTTTTCTATAGAAAGGACCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7372#0 TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCG 60 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 CCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGA 120 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 AGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCT 180 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 TCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGA 240 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 AAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGC 300 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 TATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATT 360 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 ATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAA 420 consensus_7372#1 ------------------------------------------------------------ consensus_7372#0 AAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGAC 480 consensus_7372#1 -----------------------------------------GGACGAGACAAG-GGGGAC 18 * * **** ****** consensus_7372#0 TGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACT 540 consensus_7372#1 TGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACT 78 ************************************************************ consensus_7372#0 TTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAA 600 consensus_7372#1 TCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAA 138 * ******************************************** ************* consensus_7372#0 TCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCAC 660 consensus_7372#1 TCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCAC 198 ********** ***************** ***************** *** ********* consensus_7372#0 CAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATG 720 consensus_7372#1 CAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATG 258 ************************************************************ consensus_7372#0 AAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGG 780 consensus_7372#1 AAGATGATGGCGAAGAGAAGCAGGAGC---AGGAGGACTGGGATGGAAATGGTGAATTGG 315 *********** ***** ********* ******* ******* ** ****** *** consensus_7372#0 AGAACGCTGGTTATGAAGATGATGATG---------------AACCTGAAATTATTCTTG 825 consensus_7372#1 AGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTG 375 *** ********************** ****************** consensus_7372#0 TTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAG 885 consensus_7372#1 TCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAG 435 * ********************************************************** consensus_7372#0 TAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAG 945 consensus_7372#1 TAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAG 495 **************** ******************************************* consensus_7372#0 TCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGA 1005 consensus_7372#1 T------GTAAGACTACCCCTTTTTTTCTATAGAAAGGACC-ACCTGTATGAAAATATGA 548 * ************************* ******** ****************** consensus_7372#0 CTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA 1052 consensus_7372#1 CTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA------------ 583 *********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||