These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence [CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCCTCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGCGGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTACAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTTCGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTACAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGTTGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGATTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCGAGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGATTGACAAGCTTGCCAAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGATGCAAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCTCGTCATCATCTTGACGGTTTGCCGTGACTTGAACTGCTGGTAACACACAACACATATACGGCTCACCTCACCTAATATTTGCTATAGCCTTCAGTTCTGATAATGCTGAAGAAAGGGCACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAATAANAAAAAAAAAAAAAAAAAAAAAAAAANA] [+] EMBL AK069165 [CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCCTCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGCGGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTACAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTTCGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTACAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGTTGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGATTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCGAGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGATTGACAAGCTTGCCAAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGATGCAAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCTCGTCATCATCTTGACGGTTTGCCGTGACTTGAACTGCTGGTAACACACAACACATATACGGCTCACCTCACCTAATATTTGCTATAGCCTTCAGTTCTGATAATGCTGAAGAAAGGGCACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAAT ] [+] EMBL C99511 [ GATCCTCGACATCATCTTGACGGTTTNCCGTGACTTGAACTGCTGGTAACNCACAACACATNTACGGCTCACCTCACCTAATATTTGCTATANCCTTCAGTTCTGATAATGCTGAAGAANGGGCACACNTAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANA] consensusID : consensus_7378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence [TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACACATATACGGGCT-CACCTCACC-TAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGAAGGAAGGGGCNCACATAAATNTGGGG] [+] EMBL AU164139 [TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACACATATACGGGCT CACCTCACC TAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGAAGGAAGGGGCNCACATAAATNTGGGG] [+] EMBL C73843 [TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGT GGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCNCGTCATCATCTTGAC GGTTTGCCGTGACTTGAACCTGCTGGTAACACACAACACATATACGGGGTNAACCTCACCNAAATAATTTGCTATAGGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7378#0 CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCC 60 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 TCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGC 120 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 GGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTA 180 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 CAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTT 240 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 CGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTA 300 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 CAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGT 360 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 TGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGA 420 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 TTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCG 480 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 AGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGAT 540 consensus_7378#1 -----------------TCATCTGTTGCATCAGGTTTTAGATCGTGG----TGAGAAAAT 39 * * *** * ** * * * **** * ** consensus_7378#0 TGACAAGCTTGCC---AAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGAT-GC 596 consensus_7378#1 TGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCAC 99 *** ***** * ** *** ** ** **** * * ** * * consensus_7378#0 AAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAAT---TGAGCTGCTTGTCGACAAGA 653 consensus_7378#1 ATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGA 159 * ** ** * ** ** * * * *** ** ** * * * * ** consensus_7378#0 CAGAGGATCTC-CGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGA 712 consensus_7378#1 TATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGA 219 * *** * * * ***************************************** consensus_7378#0 AAGATGTGGTGGG-AGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATT 771 consensus_7378#1 AAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATT 279 ************* ********************************************** consensus_7378#0 GATCCTCGTCATCATCTTGACGG-TTTGCCGTGACTTGAAC-TGCTGGTAACACACAACA 829 consensus_7378#1 GNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACA 339 * ********************* ***************** ****** *********** consensus_7378#0 CATATACGG-CTCACCTCACCTAATATTT-GCTATAG-CCTTCAGTTCTGATAATGCTGA 886 consensus_7378#1 CATATACGGGCTCACCTCACCTAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGA 399 ********* ******************* ******* ******* ************** consensus_7378#0 AGAAAGGG-CACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACA 945 consensus_7378#1 AGGAAGGGGCNCACATAAATNTGGGG---------------------------------- 425 ** ***** * ******** ** * consensus_7378#0 AAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTG 1005 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 CTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGA 1065 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 GCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGT 1125 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 ATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGC 1185 consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 TAATAANAAAAAAAAAAAAAAAAAAAAAAAAANA 1219 consensus_7378#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||