These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1184 fasta sequence [CATGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGGATCCCAAGGTCTGATAGACCTGAGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGGTCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAACTTCCTCCTGGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGATCGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGACGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGCCACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGGAGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCACCAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATATATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC] [+] EMBL AK108277 [CATGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGGATCCCAAGGTCTGATAGACCTGAGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGGTCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAACTTCCTCCTGGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGATCGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGACGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGCCACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGGAGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCACCAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTC ] [-] EMBL BI306686 [ TCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTGCCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATATATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC] consensusID : consensus_7379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATATGATTGAAATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAATAGGAAAAACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCAGGAAACATATTTTAAGTGTGATCAT] [+] EMBL AK109264 [TGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATATGATTGAAATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAATAGGAAAAACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCAGGAAACATATTTTAAGTGTGATCAT] consensusID : consensus_7379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGTCGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGCCCGAGTTCGCCACCAGANATCGCCCCCAGGGCAATCAAGGACATGGGTGGATCCAGGCCGCGATAACTGACCCCCCACTTCCCAGGTATTGACAAGCGTGGCACCACAACCGCCTTGAACCCACCAAGCTAACTTCCCCGCGTTACTATCCTACGG] [+] EMBL BQ164671 [CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGTCGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGCCCGAGTTCGCCACCAGANATCGCCCCCAGGGCAATCAAGGACATGGGTGGATCCAGGCCGCGATAACTGACCCCCCACTTCCCAGGTATTGACAAGCGTGGCACCACAACCGCCTTGAACCCACCAAGCTAACTTCCCCGCGTTACTATCCTACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7379#0 CATGAACTGATGAACAACCTGCAGT-CAGA-GATGGCGT-CGCCGCGAAT-CTGCTGT-T 55 consensus_7379#2 ------------------CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGT 42 consensus_7379#1 --TGAACTGATGAACAACCTGCAGT-CAGA-GATGGCGT-CGCCGCGAAT-CTGCTGT-T 53 ******* **** ******** ********** ******* * consensus_7379#0 CGGCGCTGCTCGTGCTGCTCCTGGTTT--CCTCGTGCAATGCAGGTGACCACCCGGCCTG 113 consensus_7379#2 CGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTG 102 consensus_7379#1 CGGCGCTGCTCGTGCTGCTCCTGGTTT--CCTCGTGCAATGCAGGTGACCACCCGGCCTG 111 ************************* * ******************************* consensus_7379#0 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTT-CCACGGCGGCGTCGGCGGCG 172 consensus_7379#2 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCG 162 consensus_7379#1 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTT-CCACGGCGGCGTCGGCGGCG 170 *************************************** ******************** consensus_7379#0 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTG-TTC 231 consensus_7379#2 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTC 222 consensus_7379#1 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTG-TTC 229 ******************************************************** *** consensus_7379#0 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTC 291 consensus_7379#2 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGC 282 consensus_7379#1 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTC 289 ******************************************************* ** * consensus_7379#0 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGC 351 consensus_7379#2 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGC 342 consensus_7379#1 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGC 349 ************************************************** ********* consensus_7379#0 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGC 411 consensus_7379#2 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGC 402 consensus_7379#1 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGC 409 **************************************************** ******* consensus_7379#0 GCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGG 471 consensus_7379#2 -CCGAGTTCGCC-ACCAG-ANATCGCCCCC---AGGGCAATC--AAGGACA-TGGGTGGA 453 consensus_7379#1 GCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATA-TGATTGAA 468 *********** ***** * **** ** * *** * ** * * ** ** consensus_7379#0 ATCCCAAGGTCTGATAGACCTG-AGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGG 530 consensus_7379#2 --TCCAGGCCGCGATAA--CTG-ACCCCCCACTTCCCAGGTAT--TGACAAGCGTGGCA- 505 consensus_7379#1 ATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAA 528 * * * ** * * * * ** consensus_7379#0 TCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAAC--TTCCTCCT 588 consensus_7379#2 -CCACAACCGCCTTGA---ACCCACCAAGCTAACTTCC--CCGCGTTACT--ATCCTACG 557 consensus_7379#1 TAGGAAA--AACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCA 586 * * * * * * ** * * consensus_7379#0 GGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGAT 648 consensus_7379#2 G----------------------------------------------------------- 558 consensus_7379#1 GGAAACATATTTTAAGTGTGATCAT----------------------------------- 611 * consensus_7379#0 CGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGA 708 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGC 768 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGG 828 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 AGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCAC 888 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCT 948 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 TAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGC 1008 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 TAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTA 1068 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 ATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATA 1128 consensus_7379#2 ------------------------------------------------------------ consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 TATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC 1184 consensus_7379#2 -------------------------------------------------------- consensus_7379#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||