These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1460 fasta sequence [AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACCCCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAAGGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCTGGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATGCACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGAGCTCCTGTCGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCGAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGGCGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTGCCTAACAAATGCTATGAAGTGTT] [+] EMBL AK064118 [AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACCCCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAAGGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCTGGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATGCACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGAGCTCCTGTCGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCGAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGGCGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTGCCTAACAAATGCTATGAAGTGTT] consensusID : consensus_7383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1266 fasta sequence [TCTAACATTCTAATTCCATTTTTGAGAAAAAAATATAAAATAAAAATGTTACATAGTTTTTCCGACCATTTCCCTCCCTAGATGGCCCCATATTTTTCAGCCGTCGGAAATACTGTGTGTCCATATTACGTCGTCCCCAGTATCATCCGGCCGGAACCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGTGCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG-CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA] [+] EMBL AY346328 [TCTAACATTCTAATTCCATTTTTGAGAAAAAAATATAAAATAAAAATGTTACATAGTTTTTCCGACCATTTCCCTCCCTAGATGGCCCCATATTTTTCAGCCGTCGGAAATACTGTGTGTCCATATTACGTCGTCCCCAGTATCATCCGGCCGGAACCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGTGCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA] [+] EMBL AF145731 [ GTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA] [+] EMBL CA753207 [ CGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTTCTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTTCTTGCTGCCGCAGCTTCTGAGAGCTTCTCTCCGCGCTTTTTCGCCCGGC GCGGCGCCCCTGCCGCCATCACCGCCGCCGCCCCCCTGCCGTTTCCCGGCGCTGGCTCACCCCCGTCGTTCTCCCCCCCTTGGTTCGGCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7383#0 AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCA 60 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 TCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACC 120 consensus_7383#1 --------------------------------------------------TCTAACATTC 10 * * * consensus_7383#0 CCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAA 180 consensus_7383#1 TAATTCCATTTTTGAGAAAAAAATATAAAATA----AAAATGTTACATAGTTTTTCCGA- 65 ** * **** * ** * * ** * * ** * ** consensus_7383#0 GGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCT 240 consensus_7383#1 -----CCATTTC-CCTCCCTAGATGGC----CCCATATTTTTCAGCCGTCGGAAATACTG 115 ***** * *** * * ** ** * ** * ** * ** ** consensus_7383#0 GGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATG 300 consensus_7383#1 TGTGTCCATATT------------------ACGTCGTCCCCAGTATCATCCGGCCGGA-A 156 * * * * * * * *** ** * * * * * consensus_7383#0 CACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGA 360 consensus_7383#1 CCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGT 216 * * ** * * * * * * * * ** ** ** * **** ** consensus_7383#0 GCTCCTGT-CGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGC 419 consensus_7383#1 GCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGC 276 ** * * * * ** *** ************************************* consensus_7383#0 GAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGC 479 consensus_7383#1 AAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGC 336 *********************************************************** consensus_7383#0 AGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGT 539 consensus_7383#1 AGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGT 396 ************************************************************ consensus_7383#0 AGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTT 599 consensus_7383#1 AGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTT 456 ************************************************************ consensus_7383#0 GAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCT 659 consensus_7383#1 GAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCT 516 ************************************************************ consensus_7383#0 GACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGA 719 consensus_7383#1 GACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGA 576 ************************************************************ consensus_7383#0 GGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGA 779 consensus_7383#1 GGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGA 636 *************************************** ******************** consensus_7383#0 GCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGT 839 consensus_7383#1 GCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGT 696 ************************************************************ consensus_7383#0 GGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCT 899 consensus_7383#1 GGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCT 756 **************** ******************************************* consensus_7383#0 CCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAG 959 consensus_7383#1 CCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAG 816 ************************************************************ consensus_7383#0 CAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGG 1019 consensus_7383#1 CAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGG 876 ************************************************************ consensus_7383#0 CGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCC 1079 consensus_7383#1 CGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCC 936 ********************* ************************************** consensus_7383#0 GTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGC 1139 consensus_7383#1 GTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGC 996 ************************************************************ consensus_7383#0 CGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCA 1199 consensus_7383#1 CGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCA 1056 ************************************************************ consensus_7383#0 GTTTTTTTT--CTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATA 1257 consensus_7383#1 GTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATA 1116 ********* ************************************************* consensus_7383#0 TACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCAT 1317 consensus_7383#1 TACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCAT 1176 ************************************************************ consensus_7383#0 GCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACAT 1377 consensus_7383#1 GCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACAT 1236 ************************************************************ consensus_7383#0 ATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTG 1437 consensus_7383#1 ATACTTTGTAAAAATGTAAAAAAAAAAAAA------------------------------ 1266 ********************* ** * consensus_7383#0 CCTAACAAATGCTATGAAGTGTT 1460 consensus_7383#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||