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Oryza sativa
cluster # 7388 cluster # 7388       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7388#0 length = 1220 sequences # 4  

consensusID : consensus_7388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1220
fasta sequence
                              [TCTTTTTTT--TGGATAATTTCAAATGTTTCTTCTTCTTCTTGCGTGTCAGTTGGTCTAGCCTTCTAGGGCTATGCTTCATTAGTGTACACTTGGGATGAAAAGATTTACAGCAAAGCAAGCAAGAACATGGGCGAATAAATTAAC-AAAAAAAACCAAGTGAGATTAGTAGATAGGATCAACAAGGGACTAAGCTAGCTACCACCTGAATTATGATGCATGGGAGCAAAAAAGACACTAGCTAGAGAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTCTTGAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTCCCTGGCTCTCTTGCACCCGGCCATCTGTTCGACCGGCGCCGGCGCCGTGAGCAGGTCCACGCCG-AAGAGCCTGACGGCCTTCACCGGCGACGGCGCTGGCTGATCAGCGGGCGACGCGAGGGCGGCGCCGGTCGACCGTACTAACTTGCAGTCGATGAAGAGCTTGCCGTCGTCGCCGGCACTGGCGGCGGAGCGGTAGAAGCCGACGACGTCGCCGGCGTGGAGACCCTTCTCCTTGACGAAGCGGCTCCAGCCCTTGGTTAGCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCGCCACACCTTGCCGGCGGCGTCCTCGAAGTTGAGGAGGACACCCTTGCTCTCGCCGCCGGCGGACGGGAGCTGTAGCGGGAAGTGCTTCTCGGCGTGCTGCTTCGGTATGACGAGCCTGTTCAGCTTGCCCACGTCGCTCGGGGTGACCGTCTTGTCGAACAGGTGGTCGCGCGCCGCGGCGGGCGCGAAGGGGGAGCGGGGCGACGAGAGGTGGCCGTTGGAGAGGGAGGCGGTGGTGGTCGCGGCCGACGGCGTGGAGGCGGCGAAGGTGCGCTTGCTCTGCGCGAGCTCGTCGAAGTAGGTGTGCTTGCGGAGCATGTCGACGACCTCGGCCTTGGAGCGCGTGGCGAGGAAGCGAAGCTCGGCGGCGGCGTCCGGGTCGGCCTCGGCGAGCGGGCGGAAGTTGGTGACGGCGTCGCGGCCGCGGAAGCGCTGCGCGGCGACGTCGTAGGCGCGCGCGGCGTCGTCCTCCCCGGCGAACGTGCCGAGCCACACCCGCTGGTGCCGCTCGTAGATCTGCGCGCCCCACCTCCCGTTGGGCTGCGGCACGACGCCCTTGAACTTGGACGACGGC]

[+] EMBL CB658384             [TCTTTTTTT  TGGATAATTTCAAATGTTTCTTCTTCTTCTTGCGTGTCAGTTGGTCTAGCCTTCTAGGGCTATGCTTCATTAGTGTACACTTGGGATGAAAAGATTTACAGCAAAGCAAGCAAGAACATGGGCGAATAAATTAAC AAAAAAAACCAAGTGAGATTAGTAGATAGGATCAACAAGGGACTAAGCTAGCTACCACCTGAATTATGATGCATGGGAGCAAAAAAGACACTAGCTAGAGAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTCTTGAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTCCCTGGCTCTCTTGCACCCGGCCATCTGTTCGACCGGCGCCGGCGCCGTGAGCAGGTCCACGCCG AAGAGCCTGACGGCCTTCACCGGCGACGGCGCTGGCTGATCAGCGGGCGACGCGAGGGCGGCGCCGGTCGACCGTACTAACTTGCAGTCGATGAAGAGCTTGCCGTCGTCGCCGGCACTGGCGGCGGAGCGGTAGAAGCCGACGACGTCGCCGGCGTGGAGACCCTTCTCCTTGACGAAGCGGCTCCAGCCCTTGGTTAGCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCGCCACACCTTGCCGGCGGCGTCCTCGAAGTTGAGGAGGACACCCTTGCTCTCGCCGCCGGCGGACGGGAGCTGTAGCGGGAAGTGCTTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AU097566             [ttTTTTTTTGATGGATAATTTCAAATGTTTCTTCTTCTTCTTGTGTGTCAGTTGGTCTAGCCTTCTAGGGCTATGCTTCATTAGTGTACACTTGGGATGAAAAGATTTACAGCAAAGCAAGCAAGAACATGGGCGAATAAATTAAC AAAAAAAACCAAGTGAGATTAGTAGATAGGATCAACAAGGGACTAAGCTAGCTACCACCTGAATTATGATGCATGGGAGCAAAAAAGACACTAGCTAGAGAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTCTTGAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTCCCTGGCTCTCTTGCACCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL C99389               [                                                                                                                                         ttttTTANCNAAAAAAAACCAAGTTAGATTAGTAGATAGGATCAACAAGGGACTAAGCTAGCTACCACCTTAATTATGATGCATGGGAGCAAAAAAAACACTAGCTAGANAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTNTTNAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTNCCTGGCTTTCTTGCACCCGGCCATCTGTTCGACCGGCGCCGGCGCCGTGAGCAGGTCCACGCCGAAAGA NCTGACGGCCTTNACCGGCGACGGNGCTGGCTGATCAGCGGGCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB635385             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGAAGAGCTTGCCGTCGTCGCCGGCACTGGCGGCGGAGCGGTAGAAGCCGACGACGTCGCCGGCGTGGAGACCCTTCTCCTTGACGAAGCGGCTCCAGCCCTTGGTTAGCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCGCCACACCTTGCCGGCGGCGTCCTCGAAGTTGAGGAGGACACCCTTGCTCTCGCCGCCGGCGGACGGGAGCTGTAGCGGGAAGTGCTTCTCGGCGTGCTGCTTCGGTATGACGAGCCTGTTCAGCTTGCCCACGTCGCTCGGGGTGACCGTCTTGTCGAACAGGTGGTCGCGCGCCGCGGCGGGCGCGAAGGGGGAGCGGGGCGACGAGAGGTGGCCGTTGGAGAGGGAGGCGGTGGTGGTCGCGGCCGACGGCGTGGAGGCGGCGAAGGTGCGCTTGCTCTGCGCGAGCTCGTCGAAGTAGGTGTGCTTGCGGAGCATGTCGACGACCTCGGCCTTGGAGCGCGTGGCGAGGAAGCGAAGCTCGGCGGCGGCGTCCGGGTCGGCCTCGGCGAGCGGGCGGAAGTTGGTGACGGCGTCGCGGCCGCGGAAGCGCTGCGCGGCGACGTCGTAGGCGCGCGCGGCGTCGTCCTCCCCGGCGAACGTGCCGAGCCACACCCGCTGGTGCCGCTCGTAGATCTGCGCGCCCCACCTCCCGTTGGGCTGCGGCACGACGCCCTTGAACTTGGACGACGGC]


>consensus_7388#0 TCTTTTTTTTGGATAATTTCAAATGTTTCTTCTTCTTCTTGCGTGTCAGTTGGTCTAGCC TTCTAGGGCTATGCTTCATTAGTGTACACTTGGGATGAAAAGATTTACAGCAAAGCAAGC AAGAACATGGGCGAATAAATTAACAAAAAAAACCAAGTGAGATTAGTAGATAGGATCAAC AAGGGACTAAGCTAGCTACCACCTGAATTATGATGCATGGGAGCAAAAAAGACACTAGCT AGAGAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTCT TGAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTCCCTGGCTCTCTTGCACCCGG CCATCTGTTCGACCGGCGCCGGCGCCGTGAGCAGGTCCACGCCGAAGAGCCTGACGGCCT TCACCGGCGACGGCGCTGGCTGATCAGCGGGCGACGCGAGGGCGGCGCCGGTCGACCGTA CTAACTTGCAGTCGATGAAGAGCTTGCCGTCGTCGCCGGCACTGGCGGCGGAGCGGTAGA AGCCGACGACGTCGCCGGCGTGGAGACCCTTCTCCTTGACGAAGCGGCTCCAGCCCTTGG TTAGCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCGCCACACCTTGCCGG CGGCGTCCTCGAAGTTGAGGAGGACACCCTTGCTCTCGCCGCCGGCGGACGGGAGCTGTA GCGGGAAGTGCTTCTCGGCGTGCTGCTTCGGTATGACGAGCCTGTTCAGCTTGCCCACGT CGCTCGGGGTGACCGTCTTGTCGAACAGGTGGTCGCGCGCCGCGGCGGGCGCGAAGGGGG AGCGGGGCGACGAGAGGTGGCCGTTGGAGAGGGAGGCGGTGGTGGTCGCGGCCGACGGCG TGGAGGCGGCGAAGGTGCGCTTGCTCTGCGCGAGCTCGTCGAAGTAGGTGTGCTTGCGGA GCATGTCGACGACCTCGGCCTTGGAGCGCGTGGCGAGGAAGCGAAGCTCGGCGGCGGCGT CCGGGTCGGCCTCGGCGAGCGGGCGGAAGTTGGTGACGGCGTCGCGGCCGCGGAAGCGCT GCGCGGCGACGTCGTAGGCGCGCGCGGCGTCGTCCTCCCCGGCGAACGTGCCGAGCCACA CCCGCTGGTGCCGCTCGTAGATCTGCGCGCCCCACCTCCCGTTGGGCTGCGGCACGACGC CCTTGAACTTGGACGACGGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)