These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1580 fasta sequence [CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACTTATGGCTATGAACAGACCAATTTCTTACTATA] [+] EMBL CB670635 [CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTTCAAACTGGTTGTCACGGCTCCTGCCATT ] [+] EMBL AK071669 [ GTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACTTATGGCTATGAACAGACCAATTTCTTACTATA] [-] EMBL CB632597 [ ATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGC TGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGAAGTGATAGCGATTGATACTT ] consensusID : consensus_7389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence [TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTTAGTCCCCGGCGATCCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAACCTCTCTAATGTTTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAATTCTTGATTCAGTTACTGATGTAGCAAAGGATCTCCCGTTTTTAAGTTTGGTGATTGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATCCCTTATATATCCCGTGGAGATTGGAGGGGATTGGGGATAATAAGCCGTTACCAAGAAAAAAAAAGAGGGTTTTTTATAATTGAAATCCTGCATCAGCCACTATGATCTGCTAGTTGCATCTCCTTTTCAAGCTTAAGCTGATTTTGTGAATTCGCTATATATATGGAAATGGGGATTACTGTGGTTGATGCAATATTTTTGGCACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA] [+] EMBL CB632596 [TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTTAGTCCCCGGCGATCCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAACCTCTCTAATGTTTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAATTCTTGATTCAGTTACTGATGTAGCAAAGGATCTCCCGTTTTTAAGTTTGGTGATTGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATCCCTTATATATCCCGTGGAGATTGGAGGGGATTGGGGATAATAAGCCGTTACCAAGAAAAAAAAAGAGGGTTTTTTATAATTGAAATCCTGCATCAGCCACTATGATCTGCTAGTTGCATCTCCTTTTCAAGCTTAAGCTGATTTTGTGAATTCGCTATATATATGGAAATGGGGATTACTGTGGTTGATGCAATATTTTTGGCACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7389#0 CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCG 60 consensus_7389#1 --------------------------TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCG 34 ********************************** consensus_7389#0 GCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAG 120 consensus_7389#1 GCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTT--------AGTCCCCGGCGAT 86 ************************************ * * * * * * ** consensus_7389#0 CAGAGCTCTCCA--GGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGT 178 consensus_7389#1 CCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAA----CCTCTCTAATGT 142 * * ****** *** * * * ** * * *** ** * ** ** consensus_7389#0 GGCGTCGCCGTCGATCG-GCTCAGCGCGTTGCCGGACTGCCTCCTCCATG-TCATCATGT 236 consensus_7389#1 TTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAAT 202 * *** *** * ** * ** * * *** * ** * * * consensus_7389#0 CCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACC 296 consensus_7389#1 TCTTGATTCAGTT---ACTGATGTAGCAAAGGATC-TCCCGTTTTTAAGTTTGGTG--AT 256 *** ** ** * * ** *** * * * * * ** ** * ** * consensus_7389#0 TCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAG 356 consensus_7389#1 TGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATC 316 * ** * * * * ** ** ** ** ** * * * * * consensus_7389#0 CTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGC 416 consensus_7389#1 CCTTATATATC------------CCGTGGAGATTGGAGGGGATTGGGGATAA--TAAGCC 362 * * * * * ** ** **** *** *** ** * * * consensus_7389#0 TTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTT 476 consensus_7389#1 GTTACCA--AGAAAAAAAAAGAGGGTTTTTTATAATTGAA-------ATCCTGCATCA-- 411 * * ** *** * * ** * ** * ** * * ** *** consensus_7389#0 GGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTG 536 consensus_7389#1 ---GCCACTATG-ATCT-GCTAGTTGCATCTCCTTTTCAAGCTTAAGCT---GATTTTGT 463 * ** *** **** * * * * * ** * ***** *** * ** consensus_7389#0 GCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTA 596 consensus_7389#1 GAATTCGCTATATATATGGAAATGGGGATTACTGTGGTT----GATGCAATATTTTTGGC 519 * **** * * ** ** * * * * ** *** consensus_7389#0 ACATTTGT-----GTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCT 651 consensus_7389#1 ACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAG---AGCTC----TCCAGGTCTCC 572 ** **** * * ** ** ** * **** ***** * * * **** consensus_7389#0 GGAGGATTTGAATCTCAAA-GGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCAC 710 consensus_7389#1 AT-GGATCTGGACACCACACGAAAGCGGCCCCGTGAA-AGTGGCGTCGCCGTCGATCGGC 630 **** ** * ** * * * ** * * * ** ** * * * * consensus_7389#0 TGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCA 770 consensus_7389#1 TCAGCGCGTTGCCGGACTGCCTCCTCCATGTCA--TCATGTCCTTCATGAAGGCCAGGCA 688 * * *** * * * * * * ** ******** * * * ** consensus_7389#0 CG-GCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCG-G 828 consensus_7389#1 GGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTG 748 * * * * * * * * * * * * * ** * ** * consensus_7389#0 TCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTA 888 consensus_7389#1 CCTCGATGTAGATCATCGGGAGTTCC-----AAAGCACA-------GGTGAAGCTGCACA 796 *** **** ** * * **** ****** * * *** * * consensus_7389#0 CGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGAC 948 consensus_7389#1 GGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA---------- 846 * ** ** * * ** *** * *** * * *** consensus_7389#0 AACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACC 1008 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 AGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCA 1068 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 GTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTG 1128 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 CGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTT 1188 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 GGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGT 1248 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 CCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAA 1308 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 ACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTC 1368 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 TTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAG 1428 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 TTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGC 1488 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 TATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACT 1548 consensus_7389#1 ------------------------------------------------------------ consensus_7389#0 TATGGCTATGAACAGACCAATTTCTTACTATA 1580 consensus_7389#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||