These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1694 fasta sequence [ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCTCCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGATGGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTTTGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGATACCCATGTGTGTATTACTGACCTAGCTAAGAACTTTGGTTATCAATCGGTGGATAATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATTTTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTGAGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGTCTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATGCTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACCACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACGATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGGGCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGATCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCTTCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGC-GCCACCGACAACTTAACCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAGCTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAGTGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGTCAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTGAAATTGCCGCCAATTGGC] [+] EMBL AK065602 [ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCTCCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGATGGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTTTGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGATACCCATGTGTGTATTACTGACCTAGCTAAGAACTTTGGTTATCAATCGGTGGATAATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATTTTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTGAGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGTCTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATGCTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACCACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACGATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGGGCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGATCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCTTCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGC GCCACCGACAACTTAACCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAGCTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAGTGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGTCAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTGAAATTGCCGCCAATTGGC] [+] EMBL BI812573 [ CGTCTTCTCAACCCTAAACGT GT GACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCTTTGAGGAGGCAATAAAGCGAGGCTGCCACCGACAACTTAACC CGGT TTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACC ATGATGGCCATCTTCTTTGCATTCTTGCTGC ATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCC ACGAACATGAGTTCTGAGCTCTC AATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAAAAaa ] consensusID : consensus_7391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 490 fasta sequence [AGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAAA] [+] EMBL CF309538 [AGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAA ] [-] EMBL CF309539 [ GTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7391#0 ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCT 60 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCT 120 consensus_7391#1 -----------------------------------AGTAGTAGCTTGTGCTTGCTTTGCT 25 ************************* consensus_7391#0 CCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCC 180 consensus_7391#1 CCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCC 85 ************************************************************ consensus_7391#0 AGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGG 240 consensus_7391#1 AGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGG 145 ************************************************************ consensus_7391#0 TATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGC 300 consensus_7391#1 TATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGC 205 ************************************************************ consensus_7391#0 CGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGAT 360 consensus_7391#1 CGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGG-- 263 ********************************************************** consensus_7391#0 GGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTT 420 consensus_7391#1 -------GTTCGTTTGA---TTTCCCTTCATGGCGTGAAG-GAAGGAAGGACGATGATGA 312 *** ** ** * * * ** * *** ** *** * * ** consensus_7391#0 TGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGA 480 consensus_7391#1 TG----AGAT-TGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGC 367 ** * ** * ** *** * * * * * * * *** * consensus_7391#0 TACCCATGTGTGTATTACTGACCTAGCT----AAGAACTTTGGTTATCAATCGGTGGATA 536 consensus_7391#1 TTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTA-TTAGAAGTGA 426 * * **** * ** * * ** ** * * *** * * * * * consensus_7391#0 ATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATT 596 consensus_7391#1 TTGTGATTCTTTTTTCTTGTTTAATTATTACTG--CTAGCTAGTACTGATTGTGCCTAAA 484 ** * *** * ** * * ** ** * * * * * *** **** * consensus_7391#0 TTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTG 656 consensus_7391#1 AAAAAA------------------------------------------------------ 490 consensus_7391#0 AGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGT 716 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATG 776 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACC 836 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 ACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACG 896 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 ATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGG 956 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 GCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGA 1016 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 TCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCT 1076 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 TCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGA 1136 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 AGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGCGCCACCGACAACTTAA 1196 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCG 1256 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 GTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAA 1316 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 ACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCC 1376 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 GAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTG 1436 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 TTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAG 1496 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAG 1556 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 TGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGT 1616 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 CAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTG 1676 consensus_7391#1 ------------------------------------------------------------ consensus_7391#0 AAATTGCCGCCAATTGGC 1694 consensus_7391#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||