These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 436 fasta sequence [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT-CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTCACCTTGCAAAAAAA] [+] EMBL AU090601 [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTCACCTTGCAAAAAAA] [+] EMBL CB097104 [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTC ] [+] EMBL AU082715 [ TTAATTATCGTCATATATCATCCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCNTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATANCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACNTGCTCATCATNATCATATGAATAAACTTNATTTTTTTTCAaaaa ] consensusID : consensus_7395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCATCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA] [+] EMBL AU184454 [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCATCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7395#0 ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGAC 60 consensus_7395#1 ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGAC 60 ************************************************** ********* consensus_7395#0 TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG 120 consensus_7395#1 TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG 120 ************************************************************ consensus_7395#0 ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT 180 consensus_7395#1 ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT 180 ************************************************************ consensus_7395#0 CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT 240 consensus_7395#1 CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT 240 ************************************************************ consensus_7395#0 TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC 300 consensus_7395#1 TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC 300 ************************************************************ consensus_7395#0 TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATG 360 consensus_7395#1 TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA------ 354 ****************************************** * * * consensus_7395#0 TAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTT 420 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 TCACCTTGCAAAAAAA 436 consensus_7395#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||