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Oryza sativa
cluster # 740 cluster # 740       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_740#0 length = 771 sequences # 1  
consensus_740#1 length = 510 sequences # 1  

consensusID : consensus_740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence
                              [CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA]

[+] EMBL AK102261             [CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA]


>consensus_740#0 CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCG GCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACT CCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGC CGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTA CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCT GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGT GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATG TTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTG TGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATAT ACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCT ACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA



consensusID : consensus_740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence
                              [CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA]

[+] EMBL BI802953             [CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA]


>consensus_740#1 CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAA GGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCC GGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTA TCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGT TCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAG AAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTA TACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTA CAATGTTCCTGCTAATTCCTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_740#0      CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCG 60
consensus_740#1      ------------------------------------------------------------
                                                                                 

consensus_740#0      GCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACT 120
consensus_740#1      ------------------------------------------------------------
                                                                                 

consensus_740#0      CCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGC 180
consensus_740#1      ------------------------------------------------------------
                                                                                 

consensus_740#0      CGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTA 240
consensus_740#1      ---------------------------------------------------CGTCGCCTA 9
                                                                        *********

consensus_740#0      CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCT 300
consensus_740#1      CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCT 69
                     ************************************************* **********

consensus_740#0      GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 360
consensus_740#1      GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 129
                     ************************************************************

consensus_740#0      CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGT 420
consensus_740#1      CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGT 189
                     ************************************ ***********************

consensus_740#0      GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGA----------GAGAGAGAGAGAG 470
consensus_740#1      GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAG 249
                     *************************************          *************

consensus_740#0      AGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGC 530
consensus_740#1      AGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGC 309
                     ************************** *********************************

consensus_740#0      TTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATA 590
consensus_740#1      TTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATA 369
                     ******************************* ****************************

consensus_740#0      GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 650
consensus_740#1      GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 429
                     ************************************************************

consensus_740#0      CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGT 710
consensus_740#1      CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCC 489
                     **********************************************************  

consensus_740#0      TG-TAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTG 769
consensus_740#1      TGCTAATTCCTAAAAAAAAAA--------------------------------------- 510
                     ** *********    * **                                        

consensus_740#0      TA 771
consensus_740#1      --
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)