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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA]
[+] EMBL AK102261 [CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA]
consensusID : consensus_740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA]
[+] EMBL BI802953 [CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_740#0 CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCG 60
consensus_740#1 ------------------------------------------------------------
consensus_740#0 GCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACT 120
consensus_740#1 ------------------------------------------------------------
consensus_740#0 CCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGC 180
consensus_740#1 ------------------------------------------------------------
consensus_740#0 CGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTA 240
consensus_740#1 ---------------------------------------------------CGTCGCCTA 9
*********
consensus_740#0 CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCT 300
consensus_740#1 CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCT 69
************************************************* **********
consensus_740#0 GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 360
consensus_740#1 GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 129
************************************************************
consensus_740#0 CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGT 420
consensus_740#1 CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGT 189
************************************ ***********************
consensus_740#0 GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGA----------GAGAGAGAGAGAG 470
consensus_740#1 GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAG 249
************************************* *************
consensus_740#0 AGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGC 530
consensus_740#1 AGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGC 309
************************** *********************************
consensus_740#0 TTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATA 590
consensus_740#1 TTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATA 369
******************************* ****************************
consensus_740#0 GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 650
consensus_740#1 GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 429
************************************************************
consensus_740#0 CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGT 710
consensus_740#1 CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCC 489
**********************************************************
consensus_740#0 TG-TAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTG 769
consensus_740#1 TGCTAATTCCTAAAAAAAAAA--------------------------------------- 510
** ********* * **
consensus_740#0 TA 771
consensus_740#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||