These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA] [+] EMBL AK102261 [CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCGGCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACTCCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGCCGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGTTGTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTGTA] consensusID : consensus_740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA] [+] EMBL BI802953 [CGTCGCCTACCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCTGTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTCCGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCCTGCTAATTCCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_740#0 CCAAGAAATCAAGAAACCGTTTCAGACAACCCACTGCGCTGCCCGCCGCCGCCGTCTCCG 60 consensus_740#1 ------------------------------------------------------------ consensus_740#0 GCCGAGGATACCAACGACAACGATGAATCACCCGTCCTCCGCCGCGACCGCCACCGTACT 120 consensus_740#1 ------------------------------------------------------------ consensus_740#0 CCTCCTCCTCGCCCTCCTCGGCGTCGCCGCTGGCGGCGGCGAGGACGGCCAGAAGCGCGC 180 consensus_740#1 ------------------------------------------------------------ consensus_740#0 CGCCGGCGTGTACATCGTCATCGTGCAGCCCCCGGCCGACGGCGCCGACACCGTCGCCTA 240 consensus_740#1 ---------------------------------------------------CGTCGCCTA 9 ********* consensus_740#0 CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGGAGGCGTTGCT 300 consensus_740#1 CCACACGTGCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAGGGCGAAGAAGGCGTTGCT 69 ************************************************* ********** consensus_740#0 GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 360 consensus_740#1 GTACAGCTACCGGGCGGTCGCCAGCGGGTTCGCCGCCAAGCTCACGCCGCCGGAGCTCTC 129 ************************************************************ consensus_740#0 CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGCCCTGATCAGATGTATCATGCTGT 420 consensus_740#1 CGCCCTGCAGAAGCATCCTGCAGTTCTTCAGGTGCGACCTGATCAGATGTATCATGCTGT 189 ************************************ *********************** consensus_740#0 GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGA----------GAGAGAGAGAGAG 470 consensus_740#1 GGACAACCTCAACTGAAAGCTTCTTCCCTTTGTGAGACCACGAGAGAGAGAGAGAGAGAG 249 ************************************* ************* consensus_740#0 AGAGAGAGAGAGAGAGAGGATGATACAAAGTATAGTGCAATACTGAAATGTTCTTCATGC 530 consensus_740#1 AGAGAGAGAGAGAGAGAGGATGATACCAAGTATAGTGCAATACTGAAATGTTCTTCATGC 309 ************************** ********************************* consensus_740#0 TTCTCCGATGTTGGTGATTATGCTAATCGACAATCTAATTAGGCAGTAAAGAAGGCTATA 590 consensus_740#1 TTCTCCGATGTTGGTGATTATGCTAATCGACCATCTAATTAGGCAGTAAAGAAGGCTATA 369 ******************************* **************************** consensus_740#0 GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 650 consensus_740#1 GGCTCTGTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACAT 429 ************************************************************ consensus_740#0 CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTGT 710 consensus_740#1 CGAAATATATACAGCCAATGTATTACTAATTGAGGGAATAACAATTACTTACAATGTTCC 489 ********************************************************** consensus_740#0 TG-TAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAGTGATATACAATCTG 769 consensus_740#1 TGCTAATTCCTAAAAAAAAAA--------------------------------------- 510 ** ********* * ** consensus_740#0 TA 771 consensus_740#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||