These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 998 fasta sequence [GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC-GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAGTTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC] [+] EMBL AK107888 [GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATG ] [+] EMBL CB660416 [ TGAAAGATCAAGAGAGAAATCAAGAAGAGATCCAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCACCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATT ] [-] EMBL CB660417 [ TCCTTGACCTCGCTCCCCGAGCCACCACGGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGGGGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAGTTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC] consensusID : consensus_7406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTATCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTGATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATACTAGACATTTGATTCTGGCAGGTTGGGTGGATGGGAGGATGAGAGAGCTCACGTAGTAGCGATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAGGTTACATACTCCATTGCATTTGGAAATAAAAAGAATA] [+] EMBL CA758422 [TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTATCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTGATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATACTAGACATTTGATTCTGGCAGGTTGGGTGGATGGGAGGATGAGAGAGCTCACGTAGTAGCGATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAGGTTACATACTCCATTGCATTTGGAAATAAAAAGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7406#0 GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTA 60 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 ATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATA 120 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCC 180 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 GCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGG 240 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTAC 300 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGC 360 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGAC 420 consensus_7406#1 ---------TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGAC 51 *************************************************** consensus_7406#0 CTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCAC 480 consensus_7406#1 CTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCAC 111 ************************************************************ consensus_7406#0 GACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAA 540 consensus_7406#1 GACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAA 171 ************************************* ********************** consensus_7406#0 GGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCC 600 consensus_7406#1 GGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCC 231 ************************************************************ consensus_7406#0 TCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCG 660 consensus_7406#1 TCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCG 291 ************************************************************ consensus_7406#0 TCTTTCTCCTTCGCTCGCGGCGGC-GGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCA 719 consensus_7406#1 TATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTA 351 * ****************** ** ** ************ ***************** * consensus_7406#0 GCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTG 779 consensus_7406#1 TCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTG 411 ** *************** ***** *** ** **** *********** * ***** consensus_7406#0 TTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGC-TAGGAGAAATTAAAGGAATT 838 consensus_7406#1 ATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATAC 471 ************* ** * ********** ***** ***** * * ******* consensus_7406#0 AGCAGCTTTAATTTTTGC-GTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCG 897 consensus_7406#1 TAGACATTTGATTCTGGCAGGTTGGGTGGATGG-GAGGATGAGAGAGCTCACGTAGTAGC 530 * *** *** * ** * ** * ** *** ************** ** * * consensus_7406#0 ATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAG 957 consensus_7406#1 GATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAG 590 ************* * ** *** * ******** ******** *** ****** *** consensus_7406#0 TTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC 998 consensus_7406#1 GTTACATACTCCATTGCATTTGGAAATAAAAAGAATA---- 627 ******************** ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||