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Oryza sativa
cluster # 7418 cluster # 7418       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7418#0 length = 1491 sequences # 4  

consensusID : consensus_7418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1491
fasta sequence
                              [GATCACACCACTGACGCGCAGAGACATTACGAAGAGAGCGCGTGCAATGGCGGATCAGGCTAACACAATAGAGGTTCCCACTGACGCTGAGCTGCTGCAAGCGCAGGCCGATCTGTGGCGCCACAGCCTCTACTACCTCACCTCCACGGGACTCCGCTGCGCCATCAAGCTGGGCATCCCCACCGCCATCCACCGCCTCGGCGGCGCCGC-GTCCGTGCCCGGTCTCATGACCAAGCTGTCCCTCCCGGCGAGTAAGCAGCCGTTCCTCCGCCGCCTCATGCGCGTCCTCGTCACGAACGGCGTGTTCGCCGCAGAGCACAACGAC-GGCGAGGTCGAGCGGTACTGCCTCACCCCGCTGTCCCGCATCCTCGTCGATGGCGTCGTCGCCGACGAGCACCACAGCCAGACGTCCTTCGTGCTCGCCGCGACGTCGCGGCACTACCTCGAGGCGGCGCTGGGGCTGGACGAGTGGTTCAGGAAGGACGTGGCGCCGCCGCTCCCGTCCCCGTTCGAGGACGTGCACGGCGCGTCGCTGTTCGACGAGAGCACTGCGCTGCTGGACCCGGAGCTCGACGCCGTCGTCAACGAAGGCCTGGCGGCGCACGACAACCTCGGCATCGGCACCATCCTGAGGGAGTGCCGCGACCTCTTCCGGGGGCTCCGTTCGCTGACCGACTGCTGCGGCGGCGACGGCACGACGGCGAGGGCCATCGCCAAGGCCTACCCTCATGTCAAGTGCACTGTGCTGGACCTTCCCAAGGTGATCGACAAGGCGCCCAATGATGGTGTCGTTAACTATGTTGCAGGTGACTTGTTCCACACCGTGCCACCGGCTCAAGCCGTGATGCTCAAGCTTGTATTGCACCACTGGAGCGATGATGATTGCGTGAAGATCTTGACTCAGTGCAGAAAGGCCATTCCATCACGAGAGGAGGGAGGGAAGGTCATCATCATAGAGATACTGGTTGGACCTTCACTAGGACCAGTAATGTTTGAAGCCCAGCTGATGATGGATATGCTGATGTTGGTCAATACAAGAGGCCGGCAGCGAGATGAAAGGGATTGGCGAGATCTGTTCTTGAAAGCAGGATTCAATGACTATAAGATTGTGAAGATGCTTGGAGCTCGAGGAGTTTTCGAGGTCTATCCCTAAGATTGAGCTACCTAGCTCCTAAATGATCTTATGTGTAATGTGTGCTTCGTGTTGGGATGTGTGCCGTAAGAAGGTAAATAAAGAGAGTGCCCTACTATCTGTAAGGAAGTTCCATGCCCGACATAAAATTACCTAAAGTTTTTGACTTTGGGTACTATACAATGTTTGGTCAACATCTATTGCAGAAAATACTGAATTGCGCTCCAGATATCGATCGATCGGTGTTTTTCTGTGTACCATGACTGTACATAGATGCTTCAACAAGGCCATGTTTGGTGCTTGTTTTGTTGTACCTGGATGTATTATGATATGAATAACACATTGTTCTTGCAAAAAAA]

[+] EMBL AK059770             [GATCACACCACTGACGCGCAGAGACATTACGAAGAGAGCGCGTGCAATGGCGGATCAGGCTAACACAATAGAGGTTCCCACTGACGCTGAGCTGCTGCAAGCGCAGGCCGATCTGTGGCGCCACAGCCTCTACTACCTCACCTCCACGGGACTCCGCTGCGCCATCAAGCTGGGCATCCCCACCGCCATCCACCGCCTCGGCGGCGCCGC GTCCGTGCCCGGTCTCATGACCAAGCTGTCCCTCCCGGCGAGTAAGCAGCCGTTCCTCCGCCGCCTCATGCGCGTCCTCGTCACGAACGGCGTGTTCGCCGCAGAGCACAACGAC GGCGAGGTCGAGCGGTACTGCCTCACCCCGCTGTCCCGCATCCTCGTCGATGGCGTCGTCGCCGACGAGCACCACAGCCAGACGTCCTTCGTGCTCGCCGCGACGTCGCGGCACTACCTCGAGGCGGCGCTGGGGCTGGACGAGTGGTTCAGGAAGGACGTGGCGCCGCCGCTCCCGTCCCCGTTCGAGGACGTGCACGGCGCGTCGCTGTTCGACGAGAGCACTGCGCTGCTGGACCCGGAGCTCGACGCCGTCGTCAACGAAGGCCTGGCGGCGCACGACAACCTCGGCATCGGCACCATCCTGAGGGAGTGCCGCGACCTCTTCCGGGGGCTCCGTTCGCTGACCGACTGCTGCGGCGGCGACGGCACGACGGCGAGGGCCATCGCCAAGGCCTACCCTCATGTCAAGTGCACTGTGCTGGACCTTCCCAAGGTGATCGACAAGGCGCCCAATGATGGTGTCGTTAACTATGTTGCAGGTGACTTGTTCCACACCGTGCCACCGGCTCAAGCCGTGATGCTCAAGCTTGTATTGCACCACTGGAGCGATGATGATTGCGTGAAGATCTTGACTCAGTGCAGAAAGGCCATTCCATCACGAGAGGAGGGAGGGAAGGTCATCATCATAGAGATACTGGTTGGACCTTCACTAGGACCAGTAATGTTTGAAGCCCAGCTGATGATGGATATGCTGATGTTGGTCAATACAAGAGGCCGGCAGCGAGATGAAAGGGATTGGCGAGATCTGTTCTTGAAAGCAGGATTCAATGACTATAAGATTGTGAAGATGCTTGGAGCTCGAGGAGTTTTCGAGGTCTATCCCTAAGATTGAGCTACCTAGCTCCTAAATGATCTTATGTGTAATGTGTGCTTCGTGTTGGGATGTGTGCCGTAAGAAGGTAAATAAAGAGAGTGCCC                                                                                                                                                                                                                                                      ]
[+] EMBL AK106179             [     CACCACTGACGCGCAGAGACATTACGAAGAGAGCGCGTGCAATGGCGGATCAGGCTAACACAATAGAGGTTCCCACTGACGCTGAGCTGCTGCAAGCGCAGGCCGATCTGTGGCGCCACAGCCTCTACTACCTCACCTCCACGGGACTCCGCTGCGCCATCAAGCTGGGCATCCCCACCGCCATCCACCGCCTCGGCGGCGCCGC GTCCGTGCCCGGTCTCATGACCAAGCTGTCCCTCCCGGCGAGTAAGCAGCCGTTCCTCCGCCGCCTCATGCGCGTCCTCGTCACGAACGGCGTGTTCGCCGCAGAGCACAACGAC GGCGAGGTCGAGCGGTACTGCCTCACCCCGCTGTCCCGCATCCTCGTCGATGGCGTCGTCGCCGACGAGCACCACAGCCAGACGTCCTTCGTGCTCGCCGCGACGTCGCGGCACTACCTCGAGGCGGCGCTGGGGCTGGACGAGTGGTTCAGGAAGGACGTGGCGCCGCCGCTCCCGTCCCCGTTCGAGGACGTGCACGGCGCGTCGCTGTTCGACGAGAGCACTGCGCTGCTGGACCCGGAGCTCGACGCCGTCGTCAACGAAGGCCTGGCGGCGCACGACAACCTCGGCATCGGCACCATCCTGAGGGAGTGCCGCGACCTCTTCCGGGGGCTCCGTTCGCTGACCGACTGCTGCGGCGGCGACGGCACGACGGCGAGGGCCATCGCCAAGGCCTACCCTCATGTCAAGTGCACTGTGCTGGACCTTCCCAAGGTGATCGACAAGGCGCCCAATGATGGTGTCGTTAACTATGTTGCAGGTGACTTGTTCCACACCGTGCCACCGGCTCAAGCCGTGATGCTCAAGCTTGTATTGCACCACTGGAGCGATGATGATTGCGTGAAGATCTTGACTCAGTGCAGAAAGGCCATTCCATCACGAGAGGAGGGAGGGAAGGTCATCATCATAGAGATACTGGTTGGACCTTCACTAGGACCAGTAATGTTTGAAGCCCAGCTGATGATGGATATGCTGATGTTGGTCAATACAAGAGGCCGGCAGCGAGATGAAAGGGATTGGCGAGATCTGTTCTTGAAAGCAGGATTCAATGACTATAAGATTGTGAAGATGCTTGGAGCTCGAGGAGTTTTCGAGGTCTATCCCTAAGATTGAGCTACCTAGCTCCTAAATGATCTTATGTGTAATGTGTGCTTCGTGTTGGGATGTGTGCCGTAAGAAGGTAAATAAAGAGAGTGCCCTACTATCTGTAAGGAAGTTCCATGCCCGACATAAAATTACCTAAAGTTTTTGACTTTGGGTACTATACAATGTTTGGTCAACATCTATTGCAGAAAATACTGA                                                                                                                                               ]
[+] EMBL OSS5096A             [               GCGCAGAGACATTACGAAGAGAGCGCGTGCAATGGCGGATCAGGCTAACACAATAGAGGTTCCCACTGACGCTGAGCTGCTGCAA NGCAGGCCGATCTGTGGCGCCACAGCCTCTACTACCTCACCTCCACGGGACTCCGCTGCGCCATCAAGCTGGGCATCCCCACCGCCATCCACCGCCTNGGNGGCGCCGCGGTCCGTNCCCGGTCTCATGACCAAGCTGTCCCTCCCGGCGAGTAAGCAGCCGTTCCTCCGCCGCCTCATGCGCGTACTCGTTACGAACGGCGTGTTCG CGCAGAGGACANCGACGGGCGAGGTCGAGCGGTACTGCCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU097476             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAGATCTTGACTCAGTGCAGAAAGGCCATTCCATCACGAGAGGAGGGAGGGAAGGTCATCATCATAGAGATACTGGTTGGACCTTCACTAGGACCAGTAATGTTTGAAGCCCAGCTGATGATGGATATGCTGATGTTGGTCAATNCAAGAGGCCGGCAGCGAGATGAAAGGGATTGGCGAGATCTGTTCTTGAAAGCAGGATTCAATGACTATAAGATTGTGAAGATGCTTGGAGCTCGAGGAGTTTTCGAGGTCTATCCCTAAGATTGAGCTACCTAGCTCCTAAATGATCTTATGTGTAATGTGTGCTTCGTGTTGGGATGTGTGCCGTAAGAAGGTAAATAAAGAGAGTGCCCTACTATCTGTAAGGAAGTTCCATGCCCGACATAAAATTACCTAAAGTTTTTGACTTTGGGTACTATACAATGTTTGGTCAACATCTATTGCAGAAAATACTGAATTGCGCTCCAGATATCGATCGATCGGTGTTTTTCTGTGTACCATGACTGTACATAGATGCTTCAACAAGGCCATGTTTGGTGCTTGTTTTGTTGTACCTGGATGTATTATGATATGAATAACACATTGTTCTTGCAAAAAAA]


>consensus_7418#0 GATCACACCACTGACGCGCAGAGACATTACGAAGAGAGCGCGTGCAATGGCGGATCAGGC TAACACAATAGAGGTTCCCACTGACGCTGAGCTGCTGCAAGCGCAGGCCGATCTGTGGCG CCACAGCCTCTACTACCTCACCTCCACGGGACTCCGCTGCGCCATCAAGCTGGGCATCCC CACCGCCATCCACCGCCTCGGCGGCGCCGCGTCCGTGCCCGGTCTCATGACCAAGCTGTC CCTCCCGGCGAGTAAGCAGCCGTTCCTCCGCCGCCTCATGCGCGTCCTCGTCACGAACGG CGTGTTCGCCGCAGAGCACAACGACGGCGAGGTCGAGCGGTACTGCCTCACCCCGCTGTC CCGCATCCTCGTCGATGGCGTCGTCGCCGACGAGCACCACAGCCAGACGTCCTTCGTGCT CGCCGCGACGTCGCGGCACTACCTCGAGGCGGCGCTGGGGCTGGACGAGTGGTTCAGGAA GGACGTGGCGCCGCCGCTCCCGTCCCCGTTCGAGGACGTGCACGGCGCGTCGCTGTTCGA CGAGAGCACTGCGCTGCTGGACCCGGAGCTCGACGCCGTCGTCAACGAAGGCCTGGCGGC GCACGACAACCTCGGCATCGGCACCATCCTGAGGGAGTGCCGCGACCTCTTCCGGGGGCT CCGTTCGCTGACCGACTGCTGCGGCGGCGACGGCACGACGGCGAGGGCCATCGCCAAGGC CTACCCTCATGTCAAGTGCACTGTGCTGGACCTTCCCAAGGTGATCGACAAGGCGCCCAA TGATGGTGTCGTTAACTATGTTGCAGGTGACTTGTTCCACACCGTGCCACCGGCTCAAGC CGTGATGCTCAAGCTTGTATTGCACCACTGGAGCGATGATGATTGCGTGAAGATCTTGAC TCAGTGCAGAAAGGCCATTCCATCACGAGAGGAGGGAGGGAAGGTCATCATCATAGAGAT ACTGGTTGGACCTTCACTAGGACCAGTAATGTTTGAAGCCCAGCTGATGATGGATATGCT GATGTTGGTCAATACAAGAGGCCGGCAGCGAGATGAAAGGGATTGGCGAGATCTGTTCTT GAAAGCAGGATTCAATGACTATAAGATTGTGAAGATGCTTGGAGCTCGAGGAGTTTTCGA GGTCTATCCCTAAGATTGAGCTACCTAGCTCCTAAATGATCTTATGTGTAATGTGTGCTT CGTGTTGGGATGTGTGCCGTAAGAAGGTAAATAAAGAGAGTGCCCTACTATCTGTAAGGA AGTTCCATGCCCGACATAAAATTACCTAAAGTTTTTGACTTTGGGTACTATACAATGTTT GGTCAACATCTATTGCAGAAAATACTGAATTGCGCTCCAGATATCGATCGATCGGTGTTT TTCTGTGTACCATGACTGTACATAGATGCTTCAACAAGGCCATGTTTGGTGCTTGTTTTG TTGTACCTGGATGTATTATGATATGAATAACACATTGTTCTTGCAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)