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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2215 fasta sequence
[CGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAAGTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCCGCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTCAGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTTGTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGTAGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCGGATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAAGGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGATGGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTGTTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGACTTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGTTGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACCCCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAACCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATCATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGACCCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAATTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCAGGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGGACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGCCCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTCCAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGGTTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGCCTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGTAGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTGATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTGGTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTAGCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGTCCGGAAATGAAGAAATGAAATGCGGAT]
[+] EMBL AK120632 [CGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAAGTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCCGCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTCAGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTTGTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGTAGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCGGATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAAGGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGATGGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTGTTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGACTTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGTTGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACCCCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAACCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATCATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGACCCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAATTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCAGGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGGACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGCCCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTCCAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGGTTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGCCTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGTAGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTGATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTGGTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTAGCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGTCCGGAAATGAAGAAATGAAATGCGGAT]
consensusID : consensus_7423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence
[TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC-ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG---TTTGGGCGGCCTCGTGGATTGGGAAATTTCA--GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTAC]
[+] EMBL C73826 [TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCAATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCAATCTTGAATCGAATGCGGGTTTTTGGCCGGNCTCGTGGATTNGGAAATTTCAAGGGGTGAAGTCTT ]
[+] EMBL CB640245 [ CCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG TTTGGGCGGCCTCGTGGATTGGGAAATTTCA GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCG ]
[+] EMBL AU164212 [ TTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG TTTGGGCGGCCTCGTGGATTGGGAAATTTCA GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7423#0 --------------------------------CGATTCCCCAATCCATCCATCCAGTCCC 28
consensus_7423#1 TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCC 60
****************************
consensus_7423#0 CCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCC 88
consensus_7423#1 CCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCC 120
************************************************************
consensus_7423#0 TCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTG 148
consensus_7423#1 TCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTG 180
************************************************************
consensus_7423#0 ATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGA 208
consensus_7423#1 ATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGA 240
************************************************************
consensus_7423#0 CCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAA 268
consensus_7423#1 CCCTGGGCGATTCCCGAGGAGGAG------------------------------------ 264
************************
consensus_7423#0 GTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTT 328
consensus_7423#1 ---------------------------------------------AAAATTTTGGGCTTT 279
***************
consensus_7423#0 CTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGG 388
consensus_7423#1 CTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGG 339
************************************************************
consensus_7423#0 TGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTG 448
consensus_7423#1 TGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTG 399
************************************************************
consensus_7423#0 AAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCA 508
consensus_7423#1 AAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCA 459
************************************************************
consensus_7423#0 TCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGG 568
consensus_7423#1 TCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGG 519
************************************************************
consensus_7423#0 CTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAAC 628
consensus_7423#1 CTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAAC 579
************************************************************
consensus_7423#0 CCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCC 688
consensus_7423#1 CCGCGGCTCGCCCGGTAC------------------------------------------ 597
******************
consensus_7423#0 GCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTC 748
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 AGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTT 808
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGT 868
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 AGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCG 928
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAA 988
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGAT 1048
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTG 1108
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGAC 1168
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGT 1228
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACC 1288
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAA 1348
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATC 1408
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 ATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGAC 1468
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAA 1528
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCA 1588
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGG 1648
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 ACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGC 1708
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTC 1768
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGG 1828
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGC 1888
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGT 1948
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 AGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTG 2008
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 ATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTG 2068
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTA 2128
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGT 2188
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CCGGAAATGAAGAAATGAAATGCGGAT 2215
consensus_7423#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||