These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1502 fasta sequence [AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGCCCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGCCTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCCGCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGC-TCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCCGCGGAGACCTC-CTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGT-GCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTTTG] [+] EMBL AK119488 [AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGCCCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGCCTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCCGCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGC TCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCCGCGGAGACCTC CTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGT GCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTTTG] [+] EMBL CB680886 [ TCCCCGGGGCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGGGCTCCGACTCCGCGCCCGCCGCCCGCGTCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGGCAAGTCCACCCTCGGCTCCGCGGAGACCTCACTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGTCGCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCGAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCG GGGGGGCAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCCGCGCAAAGAAGCTGGAGCCGAGTGTTGGGACTTACAACTGCCGGATACAGTGGCTTGCCAAGAAGGGTGAAACCTTCAAGGGGGA ] [-] EMBL CB680887 [ ATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTA ] consensusID : consensus_7424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GAGGACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGATGATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCTGNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGAACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCCAATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT] [+] EMBL CA764838 [GAGGACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGATGATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCTGNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGAACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCCAATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7424#0 AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACG 60 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGAT 120 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 AGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAG 180 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGC 240 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGC 300 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCC 360 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGAC 420 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGCTCCGACGTCTCCCTCTCGGCG 480 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCC 540 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GCGGAGACCTCCTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGTGCTCCTCCACGCT 600 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAG 660 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCT 720 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTG 780 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACC 840 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 TTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTT 900 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 ACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGT 960 consensus_7424#1 --------------------------------------------------------GAGG 4 * * consensus_7424#0 GTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCA 1020 consensus_7424#1 ACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCA 64 ** *** ********** ****** *** ********************** consensus_7424#0 GCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGAT 1080 consensus_7424#1 GCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGAT 124 ********************** ************************ ************ consensus_7424#0 GATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCA 1140 consensus_7424#1 GATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCA 184 ****************** **************************************** consensus_7424#0 GTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTT 1200 consensus_7424#1 GTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTT 244 ************************* ********************************** consensus_7424#0 GTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCT 1260 consensus_7424#1 GTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCT 304 **************************************** ************** **** consensus_7424#0 GGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTAT 1320 consensus_7424#1 GNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTAT 364 * **************** ************************ ****** *** **** consensus_7424#0 GTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGA 1380 consensus_7424#1 GTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGA 424 ***************************************************** ****** consensus_7424#0 ACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCC 1440 consensus_7424#1 ACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCC 484 ************** **** *** **************** ***** ********* *** consensus_7424#0 AATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTT 1500 consensus_7424#1 AATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT-------------- 530 ********* ********* *** ********** * *** * consensus_7424#0 TG 1502 consensus_7424#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||