These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1343 fasta sequence [CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAGTTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGAATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATTCGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTGCTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCCGATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGGAGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCAAGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTACTGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTCCTTACCCTTTTTCCCGGTCGCCT] [+] EMBL CB654188 [CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAGTTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGAATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATTCGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTGCTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCCGATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAA ] [-] EMBL CB654187 [ AGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGGAGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCAAGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTACTGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTCCTTACCCTTTTTCCCGGTCGCCT] consensusID : consensus_7427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence [TCTCATCCTTAAGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTA] [-] EMBL AK109241 [TCTCATCCTTAAGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTA] [+] EMBL AU225573 [ gccgctGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGacagcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7427#0 CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAG 60 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 TTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAA 120 consensus_7427#1 --------------------------------------TCTCATCCTTAAGCACATTGAA 22 **************** ***** consensus_7427#0 TTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGA 180 consensus_7427#1 TTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGA 82 ************************************************************ consensus_7427#0 ACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCT 240 consensus_7427#1 ACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCT 142 ************************************************************ consensus_7427#0 TTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTG 300 consensus_7427#1 TTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTG 202 ************************************************************ consensus_7427#0 CAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTG 360 consensus_7427#1 CAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTG 262 ************************************************************ consensus_7427#0 CGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAA 420 consensus_7427#1 CGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAA 322 ************************************************************ consensus_7427#0 GATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGA 480 consensus_7427#1 GATTCCCAGGGCCGCTCTTCAAGTACCTGAT----------------------------- 353 ******************************* consensus_7427#0 ATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATT 540 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 CGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTG 600 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 CTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCC 660 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 GATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATC 720 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 CATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGG 780 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 AGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCA 840 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 AGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTAC 900 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 TGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGG 960 consensus_7427#1 -----------------GTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGG 396 ******************************************* consensus_7427#0 GGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGC 1020 consensus_7427#1 GGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGC 456 ************************************************************ consensus_7427#0 AGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGC 1080 consensus_7427#1 AGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGC 516 ************************************************************ consensus_7427#0 CGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCC 1140 consensus_7427#1 CGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCC 576 ************************************************************ consensus_7427#0 CTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGA 1200 consensus_7427#1 CTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGA 636 ************************************************************ consensus_7427#0 GCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTC 1260 consensus_7427#1 GCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTC 696 ************************************* ********************** consensus_7427#0 GACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTC 1320 consensus_7427#1 GACGGAGCAATCGACATGGTCGCTACGGGCTA---------------------------- 728 ******************************** consensus_7427#0 CTTACCCTTTTTCCCGGTCGCCT 1343 consensus_7427#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||