cluster # 7433

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Oryza sativa
cluster # 7433 cluster # 7433 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7433#0 length = 516 sequences # 2

consensus_7433#1 length = 500 sequences # 2

consensusID : consensus_7433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 516
fasta sequence

                              [GCTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCCAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCACGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCCACTAAGCTAAGATCACAGCACTCGCGCCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATC-AATATATAATATGCTATATGCTTTTTATTTTACACGTTTGGTTATATACCATCTCTATGGTC-TCTGCTCTTAACACATA-TGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACCTACCAACCTATCGTTGGGTGAGGATATGTGAAAGCCCAAAGCTCCGGGCCTAATTATACCCAAAAAAAAAATATCTAGAGCATATCTGATAAATTCGTCGACCATAAAAAAATGGAAAANTTCTTAACAGGGAAA]

[+] EMBL BQ907349             [GCTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCCAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCACGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCCACTAAGCTAAGATCACAGCACTCGCGCCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATC AATATATAATATGCTATATGCTTTTTATTTTACACGTTTGGTTATATACCATCTCTATGGTC TCTGCTCTTAACACATA TGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACCTACCAACCTATCGTTGGGTGAGGATATGTGAAAGCCCAAAGCTCCGGGCCTAATTATACCCAAAAAAAAAA                                                                ]
[+] EMBL BM420439             [                                                       CCGCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCA GGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCA AGCA TCGCG CTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAAATATATAATATGCTATAT ATTTTTATTTTACA GTTTGGTTATATACCATCTCTATGNTCATCTGCTCTTAACACATACTGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTA CTA CAA CTATCGTTGGGTGAGGATATGTGAAAG  CAAAGCTCCGG  CTA  TATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACCATAAAAAAATGGAAAANTTCTTAACAGGGAAA]




>consensus_7433#0
GCTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCCAGAAGGCCTACCCCG
ATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCACGGTGCAGTTGATTAGCTTC
ATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCCACTAAGCTAAGATCACAGCA
CTCGCGCCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTT
GATGATATATCAATATATAATATGCTATATGCTTTTTATTTTACACGTTTGGTTATATAC
CATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGATC
GGTTATTATTGTAAGAGTACCTACCAACCTATCGTTGGGTGAGGATATGTGAAAGCCCAA
AGCTCCGGGCCTAATTATACCCAAAAAAAAAATATCTAGAGCATATCTGATAAATTCGTC
GACCATAAAAAAATGGAAAANTTCTTAACAGGGAAA

consensusID : consensus_7433#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 500
fasta sequence

                              [TCAAGGAGCTCGAGGAGCCAAGAAGGCCTACCCCGATCCTTTGTCCGTATCATCGGCTTTCTGACAAACGTCAGCAGGTGCCAGTTGATTAGCTTCATCGCCTACAAGCCCCCACGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCACAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATCGCAGCTTTGTTTTGGGCTATGTTGATGATATATCCATATATAATATGCTATATATTTTTATTTTACCGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACCATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACCACTATCGTTGGGTGAGGATATGTGAAAGCCAAGCTCCGGCTATATACACCCCAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACCAATAAAAAAAATGGATGGTATTAAAAAAAAAAGTTTGTTTAAAAAAAAAA]

[+] EMBL BI808640             [TCAAGGAGCTCGAGGAGCCAAGAAGGCCTACCCCGATCCTTTGTCCGTATCATCGGCTTTCTGACAAACGTCAGCAGGTGCCAGTTGATTAGCTTCATCGCCTACAAGCCCCCACGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCACAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATCGCAGCTTTGTTTTGGGCTATGTTGATGATATATCCATATATAATATGCTATATATTTTTATTTTACCGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACCATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACCACTATCGTTGGGTGAGGATATGTGAAAGCCAAGCTCCGGCTATATACACCCCAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACCAATAAAAAAAATGGATGGTATTAAAAAAAAAA                  ]
[+] EMBL BI808821             [                                                                                                                                                                                                                                                                                ACCATCTCTATGGTCTCTGCTCTTAACA CATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACAACTATCGTTGGGTGAGGATATGTGAAAG CAAGCTCCGGCTATATACA CACAGATATGTATCTAGAGCATATCTGATAAATTCGTCGA CAATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTAAAAAAAAAA]




>consensus_7433#1
TCAAGGAGCTCGAGGAGCCAAGAAGGCCTACCCCGATCCTTTGTCCGTATCATCGGCTTT
CTGACAAACGTCAGCAGGTGCCAGTTGATTAGCTTCATCGCCTACAAGCCCCCACGGTTG
CGAGGAGTCTGGTGGCAACTAAGCTAAGATCACAGCATCGCGCTGGTGGATTGCTGCCTA
TAATAATAGTATCGCAGCTTTGTTTTGGGCTATGTTGATGATATATCCATATATAATATG
CTATATATTTTTATTTTACCGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACA
CCATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACCA
CTATCGTTGGGTGAGGATATGTGAAAGCCAAGCTCCGGCTATATACACCCCAGATATGTA
TCTAGAGCATATCTGATAAATTCGTCGACCAATAAAAAAAATGGATGGTATTAAAAAAAA
AAGTTTGTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7433#0      GCTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCCAGAAGGCCTACCCCG 60
consensus_7433#1      ------------------------TCAAGGAGCTCGAGGAG-CCAAGAAGGCCTACCCCG 35
                                              ***************** ** ***************

consensus_7433#0      ATGCCTTTGTCCGTATCATCGGCTTC--GACAA-CGTCAGGCACGGTGCAGTTGATTAGC 117
consensus_7433#1      AT-CCTTTGTCCGTATCATCGGCTTTCTGACAAACGTCAG-CAGGTGCCAGTTGATTAGC 93
                      ** **********************   ***** ****** ** *   ************

consensus_7433#0      TTCATCGCCTACAAGCCCCCA-GGTTGCGAGGAGTCTGGTGGCCACTAAGCTAAGATCAC 176
consensus_7433#1      TTCATCGCCTACAAGCCCCCACGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAC 153
                      ********************* ********************* ****************

consensus_7433#0      AGCACTCGCGCCTGGTGGATTGCTGCCTATAATAATAGTAT-GCAGCTTTGTTTTGGGCT 235
consensus_7433#1      AGCA-TCGCGC-TGGTGGATTGCTGCCTATAATAATAGTATCGCAGCTTTGTTTTGGGCT 211
                      **** ****** ***************************** ******************

consensus_7433#0      ATGTTGATGATATATCAATATATAATATGCTATATGCTTTTTATTTTACACGTTTGGTTA 295
consensus_7433#1      ATGTTGATGATATATCCATATATAATATGCTATATA-TTTTTATTTTAC-CGTTTGGTTA 269
                      **************** ******************  ************ **********

consensus_7433#0      TATACCATCTCTATGGTCTCTGCTCTTAACAC-ATATGTAATAATCTCTTCCCTCCCTCT 354
consensus_7433#1      TATACCATCTCTATGGTCTCTGCTCTTAACACCATATGTAATAATCTCTTCCCTCCCTCT 329
                      ******************************** ***************************

consensus_7433#0      CCGATCGGTTATTATTGTAAGAGTACCTACCAACCTATCGTTGGGTGAGGATATGTGAAA 414
consensus_7433#1      CCGATCGGTTATTATTGTAAGAGTAC-TACCA--CTATCGTTGGGTGAGGATATGTGAAA 386
                      ************************** *****  **************************

consensus_7433#0      GCCCAAAGCTCCGGGCCTAATTATACCCAAAAAAAAAATATCTAGAGCATATCTGATAAA 474
consensus_7433#1      GCC--AAGCTCCGG--CTATATACACCCCAGATATG--TATCTAGAGCATATCTGATAAA 440
                      ***  *********  ***  ** **** * * *    **********************

consensus_7433#0      TTCGTCGACCATAAAAAAATGGAAAANTTCTTAACAGGGAAA------------------ 516
consensus_7433#1      TTCGTCGACCAATAAAAAAAATGGATGGTATTAAAAAAAAAAGTTTGTTTAAAAAAAAAA 500
                      ***********  ******     *   * **** *   ***