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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence
[CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAATAATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAA--CCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAATTACCG]
[+] EMBL AK106505 [CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAATAATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAA CCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAATTACCG]
[-] EMBL CF315295 [ CGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAANNCCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTTGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTAaaaaaaaaa ]
consensusID : consensus_7448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[GACACTGACATGCTGAAGGAGTAGAAAAATCCCTGACTTGAAGCAGAACCCATAAGCCCAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTT]
[+] EMBL CF315294 [GACACTGACATGCTGAAGGAGTAGAAAAATCCCTGACTTGAAGCAGAACCCATAAGCCCAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTT]
consensusID : consensus_7448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[CTNCGGGTATCGAATAACGCTTGGTTGACCCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCCCCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCGGCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCCGGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCACCCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762014 [CTNCGGGTATCGAATAACGCTTGGTTGACCCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCCCCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCGGCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCCGGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCACCCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7448#0 CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTA 60
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 GAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCG 120
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 ACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCA 180
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 AGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGAC 240
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 AGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGG 300
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 AACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAAT 360
consensus_7448#1 -------------------------------GACACTGACATGCTGAAGGAGTAGAAA-- 27
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 AATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCC 420
consensus_7448#1 AATCC-CTGACTTGAAGCAGAACCCA--TAAGCC-CAGGTTGACGTAGGTAAATGGCTCC 83
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 GAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAA 480
consensus_7448#1 GAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAA 143
consensus_7448#2 ------------------------------------------------------------
consensus_7448#0 GACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCAC 540
consensus_7448#1 GACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCAC 203
consensus_7448#2 ----------------------------------------------CTNCGGGTATCGAA 14
* ** * *
consensus_7448#0 TGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGC-----CG 595
consensus_7448#1 TGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGC-----CG 258
consensus_7448#2 TAACGCTTGGTTGAC--CCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCC 72
* * ** * * ***** *** *** * **** * * * *
consensus_7448#0 CCGGTGGTGCCGCTGCAGAGCCAAGAGACGC--AGGACCCCAACGAGC-CCAAGGCGGCG 652
consensus_7448#1 CCGGTGGTGCCGCTGCAGAGCCAAGAGACGC--AGGACCCCAACGAGC-CCAAGGCGGCG 315
consensus_7448#2 CCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCG 132
**** *** * ********* * *** ************* ****** * **
consensus_7448#0 GCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGC 712
consensus_7448#1 GCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGC 375
consensus_7448#2 GCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCC 192
*** **************** * **************** ****** ***** * ** *
consensus_7448#0 GGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCAC 772
consensus_7448#1 GGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCAC 435
consensus_7448#2 GGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCAC 252
********************** ************* ************* *********
consensus_7448#0 CCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 832
consensus_7448#1 CCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 495
consensus_7448#2 CCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 312
***** ***** ************************************************
consensus_7448#0 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTC 892
consensus_7448#1 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCA-GCTCTCCGGCCGCCTCACCCTC 554
consensus_7448#2 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTC 372
************************************* *** ******************
consensus_7448#0 ACCTCCCGTGAGG--TTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 950
consensus_7448#1 ACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 614
consensus_7448#2 ACCTCCCGTGAGG--TTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 430
************* *********************************************
consensus_7448#0 ACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTC 1010
consensus_7448#1 ACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTC 674
consensus_7448#2 ACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTC 490
******* *********************** ****************************
consensus_7448#0 TGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATC 1070
consensus_7448#1 TGTTTCCCTTCTTTTAATTGCTTCAGTTT------------------------------- 703
consensus_7448#2 TGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATC 550
*****************************
consensus_7448#0 GATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGAT 1130
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 GATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGAT 610
consensus_7448#0 CAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCT 1190
consensus_7448#1 ------------------------------------------------------------
consensus_7448#2 CAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCT 670
consensus_7448#0 GTTTGCTGCTTAATTACCG---------- 1209
consensus_7448#1 -----------------------------
consensus_7448#2 GTTTGCTGCTTAAAAAAAAAAAAAAAAAA 699
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||