|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence
[AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGC]
[+] EMBL CB660572 [AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGC]
[+] EMBL CB670637 [AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGAT ]
consensusID : consensus_7452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence
[CTTTTTTTTTTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAAATACCGTGCGCCAAACAGTGAAATGCCATGGTGA]
[+] EMBL CB641749 [CTTTTTTTTTTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAAATACCGTGCGCCAAACAGTGAAATGCCATGGTGA]
[+] EMBL CB660933 [ CGCCCACACGAAGCTGCCCTTACCGGCTACCCCGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCCATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCCCAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCCAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAACCCTGCAAAACTTCCGACCTCGTACTTTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7452#0 AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACA 60
consensus_7452#1 ----------------------------------------------------------CT 2
*
consensus_7452#0 TTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATG 120
consensus_7452#1 TTTTTTTT--------TGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATG 54
*** **** ********************************************
consensus_7452#0 GTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGA 180
consensus_7452#1 GTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGA 114
************************************************************
consensus_7452#0 AAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTC 240
consensus_7452#1 AAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTC 174
************************************************************
consensus_7452#0 CAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACA 300
consensus_7452#1 CAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACA 234
************************************************************
consensus_7452#0 ATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGA 360
consensus_7452#1 ATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGA 294
************************************************************
consensus_7452#0 AGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATT 420
consensus_7452#1 AGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATT 354
************************************************************
consensus_7452#0 CACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCAT 480
consensus_7452#1 CACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCAT 414
************************************************************
consensus_7452#0 CTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAA 540
consensus_7452#1 CTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAA 474
************************************************************
consensus_7452#0 AGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGAC 600
consensus_7452#1 AGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGAC 534
************************************************************
consensus_7452#0 ATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAA 660
consensus_7452#1 ATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAA 594
************************************************************
consensus_7452#0 ATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGAT 720
consensus_7452#1 ATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGAT 654
************************************************************
consensus_7452#0 GCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTA 780
consensus_7452#1 GCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTA 714
************************************************************
consensus_7452#0 ATAAGCTGAACATATAATTTACTTCAATATTCCAGC------------------------ 816
consensus_7452#1 ATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAA 774
************************************
consensus_7452#0 ----------------------------------
consensus_7452#1 ATACCGTGCGCCAAACAGTGAAATGCCATGGTGA 808
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||