cluster # 7460

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Oryza sativa
cluster # 7460 cluster # 7460 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7460#0 length = 705 sequences # 3

consensus_7460#1 length = 467 sequences # 1

consensusID : consensus_7460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence

                              [TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGATGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC]

[+] EMBL AK062813             [TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGATGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC]
[+] EMBL C96987               [      gatnGCTGCGGAGGCGGCGCTGCGGCCGTNGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGNGGGCGAAAGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATNCACACGGCCTTNCGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU097573             [                                                                                                                                                                                                              CGCGCGAGACGGACGGGTGCGCCGCNAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGAT NTACGCCAACTAGTTTTGGTTTTGTATGTTACTGTCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAAaaaa          ]




>consensus_7460#0
TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGA
AGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCT
CTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGA
TGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGA
GGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCC
TACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTC
GACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGC
CAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGA
TCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTAT
GTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGA
GCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAG
CAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC

consensusID : consensus_7460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [TCCCCGCCTGGTGCCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCCTACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCTCGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGATCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGTTACTGTCCCAATTTTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTTCAGTTGGTTGTAAGCAATACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAAAAAA]

[+] EMBL BI810883             [TCCCCGCCTGGTGCCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCCTACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCTCGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGATCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGTTACTGTCCCAATTTTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTTCAGTTGGTTGTAAGCAATACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAAAAAA]




>consensus_7460#1
TCCCCGCCTGGTGCCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCCTACCA
TGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCTCGACC
AGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGA
CGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGATCGATCGATCG
ATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGT
TACTGTCCCAATTTTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTC
TGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTTCAGTTGGTTGTAAGCA
ATACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7460#0      TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGA 60
consensus_7460#1      ------------------------------------------------------------
                                                                                  

consensus_7460#0      AGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCT 120
consensus_7460#1      ------------------------------------------------------------
                                                                                  

consensus_7460#0      CTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGA 180
consensus_7460#1      ------------------------------------------------------------
                                                                                  

consensus_7460#0      TGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGA 240
consensus_7460#1      ------------------------------------------------------------
                                                                                  

consensus_7460#0      GGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCC 300
consensus_7460#1      ---TCCCCGCCTGGTG--CCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCC 55
                           *  * * * **   *   ****  * **     *  *  ********* *** **

consensus_7460#0      TACCA-GCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCT 359
consensus_7460#1      TACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCT 115
                      ***** ********* ******* ****** *********** *****************

consensus_7460#0      CGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTG 419
consensus_7460#1      CGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGC------AGCAGCAGCAGAACTG 169
                      ************ **************** ********      ****************

consensus_7460#0      CCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGC-- 477
consensus_7460#1      CCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGA 229
                      **********  **** ******** *************** ************** *  

consensus_7460#0      -----CGATCGATTCACCGTC-GGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTG 531
consensus_7460#1      TCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTG 289
                           ******** ***** * ********** ********** ****************

consensus_7460#0      GTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTA---T 588
consensus_7460#1      GTTTTGAATGTTACTGTCCCAATTTTTTGGGG-----GTCAGGCTGAGTCAATCTACTAT 344
                      ****** ********* ***** *****  **     *  ****** *********   *

consensus_7460#0      TGTATTGCGAGAGCT--GATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTT 646
consensus_7460#1      TGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTT 404
                      ***************  ****** ******** ***** ************** ******

consensus_7460#0      CATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC- 705
consensus_7460#1      CAGTTGGTTGTAAGCAA-TACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAA 463
                      ** ************** ** ****** ***************************     

consensus_7460#0      ----
consensus_7460#1      AAAA 467