cluster # 7464

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Oryza sativa
cluster # 7464 cluster # 7464 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7464#0 length = 712 sequences # 1

consensus_7464#1 length = 455 sequences # 3

consensusID : consensus_7464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [TTTTTTTTTTTGGGTGGTATCAGCTGATGATAAGCCATTGATTGATGGGTTTAATGTCNACTACATGTATTGTGCTTCTGATTTGGTATATTACAAAATAGAACCTGATAGTNAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCANAAGCTTAATATCCTTTGACCACACCCCGTCCCAAATGATTTCATTTTCAAATAGTTTTTACCCGGCTTATCCCTTGAGGAACCCTGACCCGAAAATCTTATGCCTTTGCTCTTGGCCATATAGCATAATCGATTCTTCCCCCGGTCCCGAATATAAAAAACAGGGCGGTTTTTTAAAACCCCTGATCCAAATGGGGCCCAAACAGAAAAATTTTTTCCCTTTTTCTCCCGTGCCGTTTCCCCCGCGGCCCTAAACTTTTTTTTTTCGGTGGTTGTTCCCCCTTTGACGACCGCCCGTGTTCTACACCAACAAAACGCTTATACCGCCCCCCCGCGCTCCGTCTGGGGGTGGGCGCCCTGAACCCACATTTCCCCCTCCTCAAGGCGGTTCATTTTATTCCGGCGGCCCTTTCGGCGGCGCGTGTTTATAATACCCGTTTGTAGAGGGTAGAAAACACGTTGCGCCGCGCCACG]

[+] EMBL CA761625             [TTTTTTTTTTTGGGTGGTATCAGCTGATGATAAGCCATTGATTGATGGGTTTAATGTCNACTACATGTATTGTGCTTCTGATTTGGTATATTACAAAATAGAACCTGATAGTNAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCANAAGCTTAATATCCTTTGACCACACCCCGTCCCAAATGATTTCATTTTCAAATAGTTTTTACCCGGCTTATCCCTTGAGGAACCCTGACCCGAAAATCTTATGCCTTTGCTCTTGGCCATATAGCATAATCGATTCTTCCCCCGGTCCCGAATATAAAAAACAGGGCGGTTTTTTAAAACCCCTGATCCAAATGGGGCCCAAACAGAAAAATTTTTTCCCTTTTTCTCCCGTGCCGTTTCCCCCGCGGCCCTAAACTTTTTTTTTTCGGTGGTTGTTCCCCCTTTGACGACCGCCCGTGTTCTACACCAACAAAACGCTTATACCGCCCCCCCGCGCTCCGTCTGGGGGTGGGCGCCCTGAACCCACATTTCCCCCTCCTCAAGGCGGTTCATTTTATTCCGGCGGCCCTTTCGGCGGCGCGTGTTTATAATACCCGTTTGTAGAGGGTAGAAAACACGTTGCGCCGCGCCACG]




>consensus_7464#0
TTTTTTTTTTTGGGTGGTATCAGCTGATGATAAGCCATTGATTGATGGGTTTAATGTCNA
CTACATGTATTGTGCTTCTGATTTGGTATATTACAAAATAGAACCTGATAGTNAAATACA
AAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGT
AATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCANA
AGCTTAATATCCTTTGACCACACCCCGTCCCAAATGATTTCATTTTCAAATAGTTTTTAC
CCGGCTTATCCCTTGAGGAACCCTGACCCGAAAATCTTATGCCTTTGCTCTTGGCCATAT
AGCATAATCGATTCTTCCCCCGGTCCCGAATATAAAAAACAGGGCGGTTTTTTAAAACCC
CTGATCCAAATGGGGCCCAAACAGAAAAATTTTTTCCCTTTTTCTCCCGTGCCGTTTCCC
CCGCGGCCCTAAACTTTTTTTTTTCGGTGGTTGTTCCCCCTTTGACGACCGCCCGTGTTC
TACACCAACAAAACGCTTATACCGCCCCCCCGCGCTCCGTCTGGGGGTGGGCGCCCTGAA
CCCACATTTCCCCCTCCTCAAGGCGGTTCATTTTATTCCGGCGGCCCTTTCGGCGGCGCG
TGTTTATAATACCCGTTTGTAGAGGGTAGAAAACACGTTGCGCCGCGCCACG

consensusID : consensus_7464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 455
fasta sequence

                              [CGCGGGTGCTGATGATAAGCCATTGATTGATGTGTTGAATTGTACTACATGTATGTGC-TTCTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAAAGTTTAATATCCTTGAACAAAACCCGTCCGAGATGATTTCATCTCAGATAGTTCTATCCGGCTATCCCTGATGAACCTGACCGAAAATCTGATGCTGTGCTTCGGACAATAAGCATAACGATCTCCACCGTCACGAATATAAGAAACAGGCGGTATCTAAAAGCCATGATCAAATAGGGGCAGAAATGAATATCTCTCCGCTTTCACCGATAGCTAAACACAGAGCCTTAAT]

[+] EMBL CB964719             [CGCGGGTGCTGATGATAAGCCATTGATTGATGTGTTGAATTGTACTACATGTATGTGCNTTCTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAAAGTTTAATATCCTTGAACAAAACCCGTCCGAGATGATTTCATCTCAGATAGTTCTATCCGGCTATCCCTGATGAACCTGACCGAAAATCTGATGCTGTGCTTCGGACAATAAGCATAACGATCTCCACCGTCACGAATATAAGAAACAGGCGGTATCTAACAGCCATGATCAAATAGGGGCAGAAATGAATATCTCTCCGCTTTCACCGATAGCTAAACACAG         ]
[+] EMBL BI306427             [                   CCATTGATTGATGTGTTGAATTGTACTACATGTATGTGC TTCTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAAAGTTTAATATCCTTGAACAAAACCCGTCCGAGATGATTTCATCTCAGATAGTTCTATCCGGCTATCCCTGATGAACCTGACCGAAAATCTGATGCTGTGCTTCGGACAATAAGCATAACGATCTCCACCGTCACGAATATAAGAAACAGGCGGTATCTAAAAGCCATGATCAAATAGGGGCAGAAATGAATATCTCTCCGCTTTCACCGATAGCTAAACACAGAGCCTTAAT]
[+] EMBL BI305504             [                   CCATTGATTGATGTGTTGAATTGTACTACATGTATGTGC TTCTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACAAAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAAAGTTTAATATCCTTGAACAAAACCCGTCCGAGATGATTTCATCTCAGATAGTTCTATCCGGCTATCCCTGATGAACCTGACCGAAAATCTGATGCTGTGCTTCGGACAATAAGCATAACGATCTCCACCGTCACGAATATAAGAAACAGGCGGTATCTAAAAGCCATGATCAAATAGGGGCAGAAATGAATATCTCTCCGCTTTCACCGATAGCTAAACACAGAGCCTTAAT]




>consensus_7464#1
CGCGGGTGCTGATGATAAGCCATTGATTGATGTGTTGAATTGTACTACATGTATGTGCTT
CTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACAAAACATCAAAACAATTG
AATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGTAATGATCAGCATTTGCA
TGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAAAGTTTAATATCCTTGAA
CAAAACCCGTCCGAGATGATTTCATCTCAGATAGTTCTATCCGGCTATCCCTGATGAACC
TGACCGAAAATCTGATGCTGTGCTTCGGACAATAAGCATAACGATCTCCACCGTCACGAA
TATAAGAAACAGGCGGTATCTAAAAGCCATGATCAAATAGGGGCAGAAATGAATATCTCT
CCGCTTTCACCGATAGCTAAACACAGAGCCTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7464#0      TTTTTTTTTTTGGGTGGTATCAGCTGATGATAAGCCATTGATTGATGGGTTTAATGTCNA 60
consensus_7464#1      ---------------CGCGGGTGCTGATGATAAGCCATTGATTGATGTGTTGAAT-TGTA 44
                                      *     ************************* *** *** *  *

consensus_7464#0      CTACATGTATTGTGCTTCTGATTTGGTATATTACAAAATAGAACCTGATAGTNAAATACA 120
consensus_7464#1      CTACATGTAT-GTGCTTCTGAATTGGTATATTACAAAATAGAACCTGATGAGGAAATACA 103
                      ********** ********** ***************************    *******

consensus_7464#0      AAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGT 180
consensus_7464#1      AAACATCAAAACAATTGAATTTGCTCAATGCGGTTACGAAGAGAACAACGACGACATGGT 163
                      ************************************************************

consensus_7464#0      AATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCANA 240
consensus_7464#1      AATGATCAGCATTTGCATGGGCAGCATGGACATGCGTTGCATATCGGACTTGACCTCAAA 223
                      ********************************************************** *

consensus_7464#0      AGCTTAATATCCTTTGACCACACCCCGTCCCAAATGATTTCATTTTCAAATAGTTTTTAC 300
consensus_7464#1      AGTTTAATATCCTT-GAACAAAACCCGTCCGAGATGATTTCATCT-CAGATAGTTCT-AT 280
                      ** *********** ** ** * ******* * ********** * ** ****** * * 

consensus_7464#0      CCGGCTTATCCCTTGAGGAACCCTGACCCGAAAATCTTATGCCTTTGCTCTTGGCCATAT 360
consensus_7464#1      CCGGCT-ATCCCT-GATGAACC-TGACC-GAAAATCTGATGC-TGTGCTTCGGACAATA- 334
                      ****** ****** ** ***** ***** ******** **** * ****   * * *** 

consensus_7464#0      AGCATAATCGATTCTTCCCCCGGTCCCGAATATAAAAAACAGGGCGGTTTTTTAAAACCC 420
consensus_7464#1      AGCATAA-CGAT---CTCCACCGTCACGAATATAAGAAACAGG-CGGTATCT-AAAAGCC 388
                      ******* ****     ** * *** ********* ******* **** * * **** **

consensus_7464#0      CTGATCCAAATGGGGCCCAAACAGAAAAATTTTTTCCCTTTTTCTCCCGTGCCGTTTCCC 480
consensus_7464#1      ATGATCAAATAGGGGC----AGAAATGAATATCTCTCCGCTTTCACCGATA--GCTAAAC 442
                       ***** **  *****    * * *  *** * *  **  **** **  *   * *   *

consensus_7464#0      CCGCGGCCCTAAACTTTTTTTTTTCGGTGGTTGTTCCCCCTTTGACGACCGCCCGTGTTC 540
consensus_7464#1      ACAGAGCCTTAAT----------------------------------------------- 455
                       *   *** ***                                                

consensus_7464#0      TACACCAACAAAACGCTTATACCGCCCCCCCGCGCTCCGTCTGGGGGTGGGCGCCCTGAA 600
consensus_7464#1      ------------------------------------------------------------
                                                                                  

consensus_7464#0      CCCACATTTCCCCCTCCTCAAGGCGGTTCATTTTATTCCGGCGGCCCTTTCGGCGGCGCG 660
consensus_7464#1      ------------------------------------------------------------
                                                                                  

consensus_7464#0      TGTTTATAATACCCGTTTGTAGAGGGTAGAAAACACGTTGCGCCGCGCCACG 712
consensus_7464#1      ----------------------------------------------------