These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1794 fasta sequence [TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCTCTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGATTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGTCCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGTTTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCATCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCTCCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTACTTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATCCACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGCAATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTGACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTGTCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATCGATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGTCGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGAAACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTGGTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACTTTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCTTAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAGAGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTCAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTCTTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA] [+] EMBL AK064076 [TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCTCTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGATTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGTCCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGTTTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCATCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCTCCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTACTTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATCCACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGCAATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTGACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTGTCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATCGATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGTCGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGAAACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTGGTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACTTTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCTTAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAGAGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTCAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGGAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGC ] [-] EMBL CA759812 [ GCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTAAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTTTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACCCATACCCAGAGAGCAAGAAAGAAAAATGCCCATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTCTTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA] [+] EMBL AU225667 [ gccgctGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTA ] consensusID : consensus_7473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CTTAGCGGGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTCATTTTTTGTGTGGCAATCTGATCTCACAGCGTCTTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGCAGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA] [-] EMBL CA759813 [CTTAGCGGGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTCATTTTTTGTGTGGCAATCTGATCTCACAGCGTCTTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGCAGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7473#0 TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCT 60 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGA 120 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGT 180 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGT 240 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCA 300 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCT 360 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTAC 420 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATC 480 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGC 540 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 AATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTG 600 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 ACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTG 660 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATC 720 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGT 780 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGA 840 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 AACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTG 900 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACT 960 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCT 1020 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAG 1080 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 AGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTG 1140 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTC 1200 consensus_7473#1 ---------------------------------------------------------CTT 3 ** consensus_7473#0 AGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGG 1260 consensus_7473#1 AGCGG-GCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGG 62 ***** ********************************************** ******* consensus_7473#0 AAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAA 1320 consensus_7473#1 AAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAA 122 ************************************************************ consensus_7473#0 GTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCAT 1380 consensus_7473#1 GTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCAT 182 ************************************************************ consensus_7473#0 TAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGG 1440 consensus_7473#1 TAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGG 242 ************************************************************ consensus_7473#0 CTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTG 1500 consensus_7473#1 CTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTG 302 ************************************************************ consensus_7473#0 TCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATAC 1560 consensus_7473#1 TCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATAC 362 ************************************************************ consensus_7473#0 CCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGT 1620 consensus_7473#1 CCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGT 422 ************************************************************ consensus_7473#0 ATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGG 1680 consensus_7473#1 ATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGG 482 ************************ *********************************** consensus_7473#0 GTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTC 1740 consensus_7473#1 GTCACATATTTGTGTTTTTTTTT--TCATTTTTTGTGTGGCAATCTGATCTCACAGCGTC 540 *********************** ** *************************** **** consensus_7473#0 TTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA------ 1794 consensus_7473#1 TTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGC 600 ********************************** * * * ** consensus_7473#0 ------------------------------------------------- consensus_7473#1 AGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA 649 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||